Browse Element(s) Details


Os.26488.1.S1_at

Description gb:AK068593.1
DB_XREF= gi:32978610
TID=Os.26488.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665D10.15 (P0665D10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152L23, full insert sequence.
FL= gb:AK068593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1191011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11900Os.15968.1.S1_at11/111+6441121..6452790HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os01g11910Os.26488.1.S1_at11/111+6459511..6461837Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g11920Os.43464.1.S1_at11/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920OsAffx.11218.1.S1_at7/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.8736.1.S1_a_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.12757.3.S1_at1/111+6468834..6482309retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26488.1.S1_at--1108--1451Chr01:6461435..6461459 (25 bp)
AGCAAACGCCGGAAGGTCTCCACGT
LOC_Os01g11910
Os.26488.1.S1_at--704--1032Chr12:10429396..10429420 (25 bp)
AGGTCTCCACGTTCGAGTCATCGAG
NONE
Os.26488.1.S1_at--756--1593Chr12:10429419..10429445 (25 bp)
AGCTCCTCGTCTTGACAAGTTTCAG
NONE
Os.26488.1.S1_at--992--6391Chr01:6461525..6461549 (25 bp)
GATCGGTTGCAGTGATTTTTGCTTC
LOC_Os01g11910
Os.26488.1.S1_at--656--9732Chr12:10076241..10076263 (23 bp)
TAATTACTGAAGTGGCTTCTCAACA
NONE
Os.26488.1.S1_at--1077--6772Chr12:10076267..10076290 (24 bp)
GTTAGCACTTAGCATTTTGCTGCTG
NONE
Os.26488.1.S1_at--224--10291Chr01:6461686..6461710 (25 bp)
TTTGCTGCTGCTTATCTTTTCGAAG
LOC_Os01g11910
Os.26488.1.S1_at--354--5891Chr01:6461710..6461734 (25 bp)
GAGCGTTGTGCTCCATGCATGATTA
LOC_Os01g11910
Os.26488.1.S1_at--690--8951Chr01:6461763..6461787 (25 bp)
TGACATTTTCACATTTCACTGCAAC
LOC_Os01g11910
Os.26488.1.S1_at--703--2511Chr01:6461796..6461820 (25 bp)
AACTAGTAACTAGGAGCTTTGCTCC
LOC_Os01g11910
Os.26488.1.S1_at--531--10271Chr01:6461813..6461837 (25 bp)
TTTGCTCCTTCATGCATGATGCATG
LOC_Os01g11910
Target Sequence 
AGCAAACGCCGGAAGGTCTCCACGTTCGAGTCATCGAGCTCCTCGTCTTGACAAGTTTCAGAGAAAATTACGCCAAAGTC
AAAAAGATCTGATCGGTTGCAGTGATTTTTGCTTCTGATAAATTAATCGATCATGGTTGTAAAAGAAAGATACAAAGCTG
AAGTGAGTTTCTTCTTTAATTTCTTTCTTTCTTTCTTTTTGGCAAGATTAATTACTGAAGTGGCTTCTCAACANTGGTTA
GCACTTAGCATTTTGCTGCTGCTTATCTTTTCGAAGAGCGTTGTGCTCCATGCATGATTAATNACCTTGCATTTGACATA
TATATATTTGACATTTTCACATTTCACTGCAACTTCAGTTTAACTAGTAACTAGGAGCTTTGCTCCTTCATGCATGATGC
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis