Browse Element(s) Details


Os.26641.1.S1_at

Description gb:AK068629.1
DB_XREF= gi:32978646
TID=Os.26641.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153G19, full insert sequence.
FL= gb:AK068629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2747011/11Importin-7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27450OsAffx.32146.1.S1_at11/112+16177731..16178943hypothetical protein
LOC_Os02g27460NANA2+16189556..16191285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27470OsAffx.24456.1.S1_x_at11/112+16202479..16210108Importin-7, putative, expressed
LOC_Os02g27470Os.26641.1.S1_at11/112+16202479..16210108Importin-7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26641.1.S1_at--1028--10171Chr02:16209624..16209648 (25 bp)
TATTATTGCCATTTCACCGGGTTGT
LOC_Os02g27470
Os.26641.1.S1_at--842--4431Chr02:16209660..16209684 (25 bp)
GCCATCTTGTGATTTGGCGCGACCA
LOC_Os02g27470
Os.26641.1.S1_at--1005--8391Chr02:16209675..16209699 (25 bp)
GGCGCGACCACAGGCAATCAATTTT
LOC_Os02g27470
Os.26641.1.S1_at--582--3131Chr02:16209694..16209718 (25 bp)
AATTTTGGAGCCTTAGTCTGCCATT
LOC_Os02g27470
Os.26641.1.S1_at--706--2371Chr02:16209767..16209791 (25 bp)
AAACCGGTGATAGAGCCTTCTTGGA
LOC_Os02g27470
Os.26641.1.S1_at--999--9571Chr02:16209785..16209809 (25 bp)
TCTTGGATAGTCTCTTCACCGGAAG
LOC_Os02g27470
Os.26641.1.S1_at--690--5331Chr02:16209806..16209830 (25 bp)
GAAGTCATTTTCCTAGTGGCCCATC
LOC_Os02g27470
Os.26641.1.S1_at--694--2671Chr02:16209852..16209876 (25 bp)
AAGCGTGACACTGGGAAGTTTCTCC
LOC_Os02g27470
Os.26641.1.S1_at--642--8892Chr04:10675093..10675115 (22 bp)
TGAGGGCACTAGCTTGTCATGCTGT
NONE
Os.26641.1.S1_at--1049--9051Chr02:16209976..16210000 (25 bp)
TGCATCTCCGTATCACAGTTTGTAG
LOC_Os02g27470
Os.26641.1.S1_at--719--7151Chr02:16210045..16210069 (25 bp)
GTCTAGATCTTACCGTGAGTTTCCA
LOC_Os02g27470
Target Sequence 
TATTATTGCCATTTCACCGGGTTGTGGAAGTGGTGGGCCATCTTGTGATTTGGCGCGACCACAGGCAATCAATTTTGGAG
CCTTAGTCTGCCATTTAGGCAGGAAAATTTTAGGCTCGCAAAATTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCC
TTCTTGGATAGTCTCTTCACCGGAAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACT
GGGAAGTTTCTCCAATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTTTTTGCTGGGGGCTTAGC
ATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGTATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAG
AATGTATATGGTTTTGTTCTTGTCTAGATCTTACCGTGAGTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis