Browse Element(s) Details


OsAffx.32146.1.S1_at

Description tigr:9630.m02606
TID=OsAffx.32146.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2745011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27420NANA2+16150406..16154260transposon protein, putative, Mutator sub-class
LOC_Os02g27430OsAffx.24294.1.S1_at3/112+16154595..16155020GRF zinc finger family protein
LOC_Os02g27440Os.46744.1.S1_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440OsAffx.24454.2.S1_x_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440OsAffx.24454.1.S1_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440Os.7779.1.S2_x_at10/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27450OsAffx.32146.1.S1_at11/112+16177731..16178943hypothetical protein
LOC_Os02g27460NANA2+16189556..16191285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27470OsAffx.24456.1.S1_x_at11/112+16202479..16210108Importin-7, putative, expressed
LOC_Os02g27470Os.26641.1.S1_at11/112+16202479..16210108Importin-7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32146.1.S1_at--267--9251Chr02:16178278..16178302 (25 bp)
TCCTCGTTGCCACACCGCTTGAAGA
LOC_Os02g27450
OsAffx.32146.1.S1_at--1073--2911Chr02:16178250..16178274 (25 bp)
AAGGAGAGCGAGAAAGGTCAAGACC
LOC_Os02g27450
OsAffx.32146.1.S1_at--956--8111Chr02:16178181..16178205 (25 bp)
GGACGGCGCCGTTTTTGTGCAGGGA
LOC_Os02g27450
OsAffx.32146.1.S1_at--635--391Chr02:16178039..16178063 (25 bp)
ATCAGCAACGGAAGGGCGGTGGCAA
LOC_Os02g27450
OsAffx.32146.1.S1_at--346--5151Chr02:16178018..16178042 (25 bp)
GCAACAGCAGGCAAGCGGAGACAGC
LOC_Os02g27450
OsAffx.32146.1.S1_at--386--3251Chr02:16177947..16177971 (25 bp)
CAACTCCCTTGCTGACGTTGGCCTG
LOC_Os02g27450
OsAffx.32146.1.S1_at--702--4311Chr02:16177941..16177965 (25 bp)
CCTTGCTGACGTTGGCCTGCTCCTG
LOC_Os02g27450
OsAffx.32146.1.S1_at--931--3831Chr02:16177895..16177919 (25 bp)
CTGCTCTGCCCTTGTCCGCTGGAAT
LOC_Os02g27450
OsAffx.32146.1.S1_at--1033--4111Chr02:16177860..16177884 (25 bp)
CGCTCACGAGCTAGCCACAACAGAG
LOC_Os02g27450
OsAffx.32146.1.S1_at--694--5911Chr02:16177853..16177877 (25 bp)
GAGCTAGCCACAACAGAGCGAGCAA
LOC_Os02g27450
OsAffx.32146.1.S1_at--428--9991Chr02:16177849..16177873 (25 bp)
TAGCCACAACAGAGCGAGCAAAAGC
LOC_Os02g27450
Target Sequence 
TCCTCGTTGCCACACCGCTTGAAGAGGGAAGGAGAGCGAGAAAGGTCAAGACCGAGCGGGAGCAGGGGAAGGGCTCCTTC
GTCTTCCTCGAGCTCAAGGACGGCGCCGTTTTTGTGCAGGGAGCCGGAGCGGTGGAGGCGAAGAAGGGCGGCGCGGCGGG
AGGCGGCGATGACGGGCGCCATCACCACCGCCACAACCAGGCCGTGCAGAGCGCGGTGGCGAGGGAGCGGCGGAGGCGGA
TCAGCAACGGAAGGGCGGTGGCAACAGCAGGCAAGCGGAGACAGCGGCGAACGGTGGGCCACGCCGCCCACCTCCTCCTC
CGCTCGTCGCCCAACTCCCTTGCTGACGTTGGCCTGCTCCTGCCCGCCGCCGTTCTTCGCCTCCTGCTCTGCCCTTGTCC
GCTGGAATCCGCCGCCTCCGCTCACGAGCTAGCCACAACAGAGCGAGCAAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis