Browse Element(s) Details


Os.26702.1.A1_s_at

Description gb:CB666869
DB_XREF= gi:29670594
DB_XREF=OSJNEd13P05.r
CLONE=OSJNEd13P05
TID=Os.26702.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26702 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_563871.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g130504/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13010OsAffx.27598.1.S1_at10/116+7124667..7126893RNase H domain-containing protein, putative, expressed
LOC_Os06g13020OsAffx.983.1.S1_at10/116+7127121..7132516DNA polymerase lambda, putative, expressed
LOC_Os06g13030Os.18748.1.S1_at7/116+7132792..7139004LIM domain containing protein, expressed
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed
LOC_Os06g13050OsAffx.27599.1.S1_at11/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13050Os.26702.1.A1_s_at4/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13060OsAffx.4821.1.S1_at11/116+7159388..7163157Chaperone protein dnaJ 16, putative, expressed
LOC_Os06g13070OsAffx.15402.1.S1_at11/116+7169698..7171450HhH-GPD superfamily base excision DNA repair protein
LOC_Os06g13080OsAffx.4822.1.S1_at11/116+7180703..7182460U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26702.1.A1_s_at--65--6311Chr06:7148372..7148478 (25 bp)
GATGATGGTGCTATCTGCTTGGCTC
LOC_Os06g13050
Os.26702.1.A1_s_at--573--3691Chr06:7148362..7148386 (25 bp)
CTATCTGCTTGGCTCGAAGTTTCAA
LOC_Os06g13050
Os.26702.1.A1_s_at--123--2531Chr06:7148106..7148130 (25 bp)
AACTTCTTCACTAAATTTGGACAGG
LOC_Os06g13050
Os.26702.1.A1_s_at--437--2131Chr06:7148010..7148033 (24 bp)
ACAGGTTGCTCTGTCTGAGGCACGG
LOC_Os06g13050
Os.26702.1.A1_s_at--1145--5671Chr06:7147952..7147976 (25 bp)
GACATTTTCTTTTAGGTGTTCTTGT
NONE
Os.26702.1.A1_s_at--77--2451Chr06:7147903..7147927 (25 bp)
AAAATGGCCTAAACCATGACTTCTG
NONE
Os.26702.1.A1_s_at--163--10611Chr06:7147883..7147907 (25 bp)
TTCTGCTTGGAAGGGATACTTTCTG
NONE
Os.26702.1.A1_s_at--1061--6471Chr06:7147869..7147893 (25 bp)
GATACTTTCTGCATAATTAGCCACA
NONE
Os.26702.1.A1_s_at--933--7891Chr06:7147837..7147861 (25 bp)
GGTTGTTTTGGCACTACTTGAAGAA
NONE
Os.26702.1.A1_s_at--903--5451Chr06:7147719..7147743 (25 bp)
GAACTGTCCATATGCATTTTTTCTG
NONE
Os.26702.1.A1_s_at--401--10371Chr06:7147703..7147727 (25 bp)
TTTTTTCTGGAAGCATTGATCTCAA
NONE
Target Sequence 
GATGATGGTGCTATCTGCTTGGCTCGAAGTTTCAAGATCATCAATGAANNTNTNNNNNNNNTTNANNNNNNNTTNNNNNN
NNNNNNNGATGATGGAGCANTTTGCATTGGNACANGCACTTAAAGCTAATGAANNNNTTGCAGTCACATCATTAAATCTT
GCAAACAACTTCTTCACTAAATTTGGACAGGTTGCTCTGTCTGAGGCACGGGANCATGTATATGAGATGAGCGAAAAGGA
AATAGACATTTTCTTTTAGGTGTTCTTGTTTATTTTTGNNAAGTAGCTTCGAAAAAATGGCCTAAACCATGACTTCTGCT
TGGAAGGGATACTTTCTGCATAATTAGCCACACAATCATGGTTGTTTTGGCACTACTTGAAGAAACGAAAGAAGAACATG
GGGAAGAGCAATAGAGCATGATTTATGCTTGTCATAGAAAATTTTGGTAAACTAGTTAACTCTGTAGGNTAGTCATTGAA
CTGTCCATATGCATTTTTTCTGGAAGCATTGATCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26702.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis