Browse Element(s) Details


Os.26758.1.A1_a_at

Description gb:CB642997
DB_XREF= gi:29637988
DB_XREF=OSJNEb03H09.r
CLONE=OSJNEb03H09
TID=Os.26758.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26758 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:JQ1729 (A.thaliana) JQ1729 ankyrin-repeat protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0430011/11Ankyrin repeat protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04230NANA3+1924613..1926500transposon protein, putative, unclassified
LOC_Os03g04240Os.15269.1.S1_at11/113+1927427..1928654Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os03g04250Os.23119.1.S1_at9/113+1931387..1932563Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os03g04260Os.2614.1.S1_at11/113+1933783..1935070Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g04270Os.25215.1.A1_at11/113+1935970..1938874Leucine Rich Repeat family protein, expressed
LOC_Os03g04290Os.35344.3.S1_x_at10/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290Os.35344.18.S1_x_at9/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.2.S1_s_at8/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.3.S1_x_at6/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.5.S1_x_at3/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.1.S1_s_at2/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04300Os.26758.1.A1_a_at11/113+1949407..1958621Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os03g04310Os.5860.1.S1_at11/113+1962636..1964778basic helix-loop-helix, putative, expressed
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26758.1.A1_a_at--184--9971Chr03:1955991..1956015 (25 bp)
TACCCCTTTGGAGTTATGCCTCCGG
LOC_Os03g04300
Os.26758.1.A1_a_at--672--591Chr03:1955976..1956000 (25 bp)
ATGCCTCCGGTTGGGTCATCATGCA
LOC_Os03g04300
Os.26758.1.A1_a_at--442--7131Chr03:1955962..1955986 (25 bp)
GTCATCATGCAAGGACGTATGAACT
LOC_Os03g04300
Os.26758.1.A1_a_at--940--9891Chr03:1955929..1955953 (25 bp)
TACTCAAGAGCTTTCGTCTACCAAA
LOC_Os03g04300
Os.26758.1.A1_a_at--762--5111Chr03:1955886..1955910 (25 bp)
GCACTTGGATGGTATATGACACTGT
LOC_Os03g04300
Os.26758.1.A1_a_at--709--6191Chr03:1955821..1955845 (25 bp)
GAGGCAACTCTGTTTTCTCCAGTGC
LOC_Os03g04300
Os.26758.1.A1_a_at--425--6811Chr03:1955810..1955834 (25 bp)
GTTTTCTCCAGTGCATGATCTAATC
LOC_Os03g04300
Os.26758.1.A1_a_at--211--8851Chr03:1955796..1955819 (24 bp)
TGATCTAATCACTTCTGGTTCAAGA
LOC_Os03g04300
Os.26758.1.A1_a_at--557--6471Chr03:1955697..1955721 (25 bp)
GATAGAGGTTGCTCCTTGAAGGGAA
LOC_Os03g04300
Os.26758.1.A1_a_at--760--3071Chr03:1955674..1955698 (25 bp)
AATCAACAGGTTGTGGTATGCCCAT
LOC_Os03g04300
Os.26758.1.A1_a_at--323--2951Chr03:1955640..1955664 (25 bp)
AAGGCCAAAGTTCCATGATATCAAT
LOC_Os03g04300
Target Sequence 
TACCCCTTTGGAGTTATGCCTCCGGTTGGGTCATCATGCAAGGACGTATGAACTTATCAAATTACTCAAGAGCTTTCGTC
TACCAAAGCANCATGACCCAGTTCAGCACTTGGATGGTATATGACACTGTCAANATTTATTAAAGTTTATTGAAAGATAC
TGAGCTGNTGNGAGGCAACTCTGTTTTCTCCAGTGCATGATCTAATCACTTCTGGTTCAAGATAGAGGTTGCTCCTTGAA
GGGAATCAACAGGTTGTGGTATGCCCATGATAATTGGAAGGCCAAAGTTCCATGATATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26758.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis