Browse Element(s) Details


Os.26772.1.S1_x_at

Description gb:AK071890.1
DB_XREF= gi:32981913
TID=Os.26772.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052N15, full insert sequence.
FL= gb:AK071890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3898011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38950Os.15044.1.S1_at11/1110+20426504..20430325Mitogen-activated protein kinase homolog 4, putative, expressed
LOC_Os10g38954NANA10+20429918..20431210hypothetical protein
LOC_Os10g38960OsAffx.30716.1.S1_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38960OsAffx.30716.1.S1_x_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38970Os.10203.1.S1_at11/1110+20438807..20447653expressed protein
LOC_Os10g38980Os.26772.1.S1_x_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.3.S1_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.2.S1_at2/1110+20449932..20453909expressed protein
LOC_Os10g39000Os.46884.1.S1_at11/1110+20456755..20458158expressed protein
LOC_Os10g39010Os.10505.1.S1_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S2_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S1_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39020Os.46486.1.S1_at11/1110+20466642..20469079fringe protein, putative, expressed
LOC_Os10g39030Os.17301.1.S1_at11/1110+20472065..20476769Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26772.1.S1_x_at--903--10771Chr10:20451054..20451078 (25 bp)
TTGATGATCCTTCTTCCGTTGTTAA
LOC_Os10g38980
Os.26772.1.S1_x_at--145--791Chr10:20451026..20451050 (25 bp)
ATGTGGCAAGGCATCTTCTTCAACG
LOC_Os10g38980
Os.26772.1.S1_x_at--436--10531Chr10:20450736..20450860 (25 bp)
TTCAGCCTGCAAGCATTTGGTCAGC
LOC_Os10g38980
Os.26772.1.S1_x_at--136--7111Chr10:20450640..20450741 (25 bp)
GTCAGCAAGGCTGTCTACTTCGCAG
LOC_Os10g38980
Os.26772.1.S1_x_at--1012--10631Chr10:20450622..20450646 (25 bp)
TTCGCAGCTTACCTACAGACATTGT
LOC_Os10g38980
Os.26772.1.S1_x_at--372--10771Chr10:20450560..20450584 (25 bp)
TTGAGTGACAACATTGCAGCGCCAT
LOC_Os10g38980
Os.26772.1.S1_x_at--1155--3553Chr02:3226258..3226277 (20 bp)
CATCATCATCATCTGTTCAATCCTT
NONE
Os.26772.1.S1_x_at--1007--3031Chr10:20450515..20450538 (24 bp)
AATCCTTGTCACTTTGTGCTCCAGA
LOC_Os10g38980
Os.26772.1.S1_x_at--73--2291Chr10:20450403..20450427 (25 bp)
AAATGTCATTGCCTGCATTGCCTGT
LOC_Os10g38980
Os.26772.1.S1_x_at--271--491Chr10:20450091..20450393 (25 bp)
ATCTGGAAGCTCAGGCCCACGTGTA
LOC_Os10g38980
Os.26772.1.S1_x_at--26--10331Chr10:20450049..20450073 (25 bp)
TTCTTGTAAATGAGCCTTTCCCTTC
LOC_Os10g38980
Target Sequence 
TTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAAGGCATCTTCTTCAACGCCCTCATGCTGTGGGGCATTGCACTCT
TACATTGCAACTCGCCAGAAGCAAATATTTGTAACAAATTTGCAAGCAATTAACTGTGCAACCATGTTCGGATCAATGCT
ACAGAAAGCTGGTGTATCAAATGATATTTATGAGCTTTGTGATATTGATTTAAAAGATTTCAGCCTGCAAGCATTTGGTC
AGCAAGGCTGTCTACTTCGCAGCTTACCTACAGACATTGTATTTGACAATGCTACGGGCATTAGTTTTACATGTGATTTG
AGTGACAACATTGCAGCGCCATGGCCATCATCATCATCTGTTCAATCCTTGTCACTTTGTGCTCCAGAAATGTCATTGCC
TGCATTGCCTGTCGCGCCAACATCTGGAAGCTCAGGCCCACGTGTAAATTGAATTGCATTTCATTCTTGTAAATGAGCCT
TTCCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26772.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis