Browse Element(s) Details


Os.26772.3.S1_at

Description gb:AK120472.1
DB_XREF= gi:37990095
TID=Os.26772.3
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110J07, full insert sequence.
FL= gb:AK120472.1 gb:AK101036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3898011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38950Os.15044.1.S1_at11/1110+20426504..20430325Mitogen-activated protein kinase homolog 4, putative, expressed
LOC_Os10g38954NANA10+20429918..20431210hypothetical protein
LOC_Os10g38960OsAffx.30716.1.S1_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38960OsAffx.30716.1.S1_x_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38970Os.10203.1.S1_at11/1110+20438807..20447653expressed protein
LOC_Os10g38980Os.26772.1.S1_x_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.3.S1_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.2.S1_at2/1110+20449932..20453909expressed protein
LOC_Os10g39000Os.46884.1.S1_at11/1110+20456755..20458158expressed protein
LOC_Os10g39010Os.10505.1.S1_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S2_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S1_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39020Os.46486.1.S1_at11/1110+20466642..20469079fringe protein, putative, expressed
LOC_Os10g39030Os.17301.1.S1_at11/1110+20472065..20476769Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26772.3.S1_at--798--3531Chr10:20450227..20450394 (25 bp)
CATCTGGAAGCTCAGTAGGTATCTC
LOC_Os10g38980
Os.26772.3.S1_at--322--8191Chr10:20450222..20450389 (25 bp)
GGAAGCTCAGTAGGTATCTCCAGAA
LOC_Os10g38980
Os.26772.3.S1_at--673--7851Chr10:20450210..20450234 (25 bp)
GGTATCTCCAGAACTGGAATTGGAA
LOC_Os10g38980
Os.26772.3.S1_at--912--8211Chr10:20450195..20450219 (25 bp)
GGAATTGGAATTTTGGCGCCTCTTC
LOC_Os10g38980
Os.26772.3.S1_at--587--3131Chr10:20450187..20450211 (25 bp)
AATTTTGGCGCCTCTTCTATTCTTT
LOC_Os10g38980
Os.26772.3.S1_at--583--8471Chr10:20450182..20450206 (25 bp)
TGGCGCCTCTTCTATTCTTTGCGAC
LOC_Os10g38980
Os.26772.3.S1_at--78--3931Chr10:20450158..20450182 (25 bp)
CGGCCATCACCTTCTGAGAAATGCT
LOC_Os10g38980
Os.26772.3.S1_at--989--1731Chr10:20450150..20450174 (25 bp)
ACCTTCTGAGAAATGCTTCACCTAG
LOC_Os10g38980
Os.26772.3.S1_at--331--5591Chr10:20450141..20450165 (25 bp)
GAAATGCTTCACCTAGTGAACCAGG
LOC_Os10g38980
Os.26772.3.S1_at--131--10071Chr10:20450128..20450152 (25 bp)
TAGTGAACCAGGAGCTTCTTACCCC
LOC_Os10g38980
Os.26772.3.S1_at--756--971Chr10:20450119..20450143 (25 bp)
AGGAGCTTCTTACCCCTGTTGTATT
LOC_Os10g38980
Target Sequence 
CATCTGGAAGCTCAGTAGGTATCTCCAGAACTGGAATTGGAATTTTGGCGCCTCTTCTATTCTTTGCGACGGCCATCACC
TTCTGAGAAATGCTTCACCTAGTGAACCAGGAGCTTCTTACCCCTGTTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26772.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis