Browse Element(s) Details


Os.26803.1.S1_at

Description gb:AK105999.1
DB_XREF= gi:32991208
TID=Os.26803.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.26803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H10, full insert sequence.
FL= gb:AK105736.1 gb:AK105999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3272011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32700OsAffx.19128.1.S1_at11/1111+18807209..18807644hypothetical protein
LOC_Os11g32710NANA11+18818119..18818421hypothetical protein
LOC_Os11g32720Os.26803.1.S1_at11/1111+18829542..18834002Zinc knuckle family protein, expressed
LOC_Os11g32730OsAffx.19130.1.S1_at11/1111+18836274..18836675hypothetical protein
LOC_Os11g32740OsAffx.19131.1.S1_at11/1111+18847494..18847802hypothetical protein
LOC_Os11g32750Os.33742.1.S1_at11/1111+18851426..18855715Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os11g32759Os.11375.1.S1_at11/1111+18853271..18856610expressed protein
LOC_Os11g32759Os.9786.1.S1_at10/1111+18853271..18856610expressed protein
LOC_Os11g32770OsAffx.26050.2.S2_x_at3/1111+18857091..18857414Ribulose bisphosphate carboxylase large chain, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26803.1.S1_at--81--5531Chr11:18833270..18833294 (25 bp)
GAAAACACCAACAAAATCGCCCATT
LOC_Os11g32720
Os.26803.1.S1_at--65--5451Chr11:18833339..18833363 (25 bp)
GAACCCCTGCTACCGATGTGGTGAA
LOC_Os11g32720
Os.26803.1.S1_at--669--9851Chr11:18833424..18833448 (25 bp)
TACAACTGCGGCAAGCTTGGGCACT
LOC_Os11g32720
Os.26803.1.S1_at--89--3171Chr11:18833457..18833481 (25 bp)
AATTGCCCTGGAACTTGATGACACA
LOC_Os11g32720
Os.26803.1.S1_at--184--8431Chr11:18833562..18833586 (25 bp)
GGCCTACTTCTGCTTAATGATTGAC
LOC_Os11g32720
Os.26803.1.S1_at--91--10511Chr11:18833575..18833599 (25 bp)
TTAATGATTGACTCTCCCATGGCTG
LOC_Os11g32720
Os.26803.1.S1_at--970--611Chr11:18833637..18833661 (25 bp)
ATGCTATAGTATTGGGCACCTGATA
LOC_Os11g32720
Os.26803.1.S1_at--830--4271Chr11:18833655..18833679 (25 bp)
CCTGATACTACTTGTGGTGTCTGTG
LOC_Os11g32720
Os.26803.1.S1_at--852--3211Chr11:18833684..18833708 (25 bp)
CAAGAGGTGGGCTCCTACGGTGTTT
LOC_Os11g32720
Os.26803.1.S1_at--256--6871Chr11:18833705..18833729 (25 bp)
GTTTGTCCATCATCTGCTTTGTTAA
LOC_Os11g32720
Os.26803.1.S1_at--807--5431Chr11:18833777..18833801 (25 bp)
GAACCTTCTGTTTATGGATCATGTA
LOC_Os11g32720
Target Sequence 
GAAAACACCAACAAAATCGCCCATTATGCCNCCACCTCATGGTAGCNGGAGCCCCTTCACTCCTCGGTCGAACCCCTGCT
ACCGATGTGGTGAAGACGGGCACTGGTCCAGGAACTGCCCTAAGCCGGCTTCGAGCCCACTTAACTCTCCTTGCTACAAC
TGCGGCAAGCTTGGGCACTGGAGAGGTAATTGCCCTGGAACTTGATGACACAAGAGGGGTGTTAAGAAGCATATGATCGG
TATCATTTTGGCAATGTGACAGGACCATCAGAAGCTAGGCTTAATGAGTAATGGCCTACTTCTGCTTAATGATTGACTCT
CCCATGGCTGCCATGTAAATAGGTTTAGGGTTTAGGGTTTATGCAATATGCTATAGTATTGGGCACCTGATACTACTTGT
GGTGTCTGTGGCAGCAAGAGGTGGGCTCCTACGGTGTTTGTCCATCATCTGCTTTGTTAATCACTTCTTACATGAAGTAA
CCCCAGGATTAAGTTAGGTCGTAATTGGAACCTTCTGTTTATGGATCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis