Browse Element(s) Details


Os.26806.1.S1_at

Description gb:AK073574.1
DB_XREF= gi:32983597
TID=Os.26806.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046E10, full insert sequence.
FL= gb:AK073574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g166708/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16640OsAffx.26779.2.S1_at11/115+9418028..9422983expressed protein
LOC_Os05g16640Os.51733.1.S1_x_at11/115+9418028..9422983expressed protein
LOC_Os05g16640OsAffx.26779.1.S1_x_at2/115+9418028..9422983expressed protein
LOC_Os05g16640Os.50315.2.A1_at1/115+9418028..9422983expressed protein
LOC_Os05g16660Os.48078.1.S1_at11/115+9428102..9433771Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os05g16670Os.26806.1.S1_at8/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670Os.2550.1.S1_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670OsAffx.29133.1.S1_x_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16680NANA5+9461088..9464027retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16690Os.10703.2.S1_x_at1/115+9464344..9468486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16700NANA5+9468649..9470433retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26806.1.S1_at--922--4311Chr05:9452365..9452828 (25 bp)
CCTTGAATGGGCCTGGGACCAGTAT
LOC_Os05g16670
Os.26806.1.S1_at--543--2691Chr05:9452839..9452863 (25 bp)
AAGCTCTCAGAATCCTTGACCCAAA
LOC_Os05g16670
Os.26806.1.S1_at--607--10631Chr05:9452854..9452878 (25 bp)
TTGACCCAAATCTCAAGGGATTCAA
LOC_Os05g16670
Os.26806.1.S1_at--773--6671Chr05:9452907..9452931 (25 bp)
GTTGCGCTGCACTGCACGCAGGGCT
LOC_Os05g16670
Os.26806.1.S1_at--764--6971Chr05:9452991..9453015 (25 bp)
GTACCTAAGGTGGTCACAAAGCCAA
LOC_Os05g16670
Os.26806.1.S1_at--269--9991Chr05:9453083..9453107 (25 bp)
TACCACCCATGAGTTCGGCAGGCAG
LOC_Os05g16670
Os.26806.1.S1_at--763--5451Chr05:9453107..9453131 (25 bp)
GAACGAGATCGAACCTCTGCAGCAA
LOC_Os05g16670
Os.26806.1.S1_at--503--5051Chr05:9453125..9453149 (25 bp)
GCAGCAATCACCACCTATAATCAAA
LOC_Os05g16670
Os.26806.1.S1_at--898--10771Chr05:9453175..9453199 (25 bp)
TTGTGCAGATGGTCGATTTTGGGTT
NONE
Os.26806.1.S1_at--272--5231Chr05:9453214..9453238 (25 bp)
GAATACTGCTCGTTCTTACTTACAT
NONE
Os.26806.1.S1_at--633--7571Chr05:9453325..9453349 (25 bp)
GGGCGACCCAATAGTGTCATAAGAA
NONE
Target Sequence 
CCTTGAATGGGCCTGGGACCAGTATGAAAAGGAGCAAGCTCTCAGAATCCTTGACCCAAATCTCAAGGGATTCAACAAGG
ATGAAGCTTTTAGAGTCATCCGTGTTGCGCTGCACTGCACGCAGGGCTCACCACATCAGCGACCACCAATGTCGAAGGTC
GTGGCAATGCTCACCGGAGAAGTTGAGGTACCTAAGGTGGTCACAAAGCCAAGCTACATCACTGAGTGGCAAATGATGGA
CGGTAATAGAAGCTATGTCACCAGCAGCTACTCAGGGTCTACCACCCATGAGTTCGGCAGGCAGAACGAGATCGAACCTC
TGCAGCAATCACCACCTATAATCAAAGCGGGAAGGTGAATGCAAAGTTGAATTGTGCAGATGGTCGATTTTGGGTTGATG
TGACAATATTGAATACTGCTCGTTCTTACTTACATATATAGTTGCATGCTGATGTTAGTGGTATTTGGATATTTATAGAT
ATTTCAGGAACAAAGCTGTAATAAGTTTAAACTGTAATAAGGGGCGACCCAATAGTGTCATAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis