Browse Element(s) Details


Os.48078.1.S1_at

Description gb:AK111524.1
DB_XREF= gi:37988187
TID=Os.48078.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002P07, full insert sequence.
FL= gb:AK111524.1 gb:AK104927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1666011/11Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16630Os.10825.1.S1_at8/115+9411679..9415435UPF0071 protein, putative, expressed
LOC_Os05g16640OsAffx.26779.2.S1_at11/115+9418028..9422983expressed protein
LOC_Os05g16640Os.51733.1.S1_x_at11/115+9418028..9422983expressed protein
LOC_Os05g16640OsAffx.26779.1.S1_x_at2/115+9418028..9422983expressed protein
LOC_Os05g16640Os.50315.2.A1_at1/115+9418028..9422983expressed protein
LOC_Os05g16660Os.48078.1.S1_at11/115+9428102..9433771Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os05g16670Os.26806.1.S1_at8/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670Os.2550.1.S1_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670OsAffx.29133.1.S1_x_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48078.1.S1_at--791--4871Chr05:9433494..9433518 (25 bp)
GCATTTGAGGAAGGCCGAAGGTACC
LOC_Os05g16660
Os.48078.1.S1_at--993--4291Chr05:9433517..9433541 (25 bp)
CCTTTTGGTTGGGAAGATGTTTCAT
LOC_Os05g16660
Os.48078.1.S1_at--130--6291Chr05:9433532..9433556 (25 bp)
GATGTTTCATCTCCTGTCATGTGGA
LOC_Os05g16660
Os.48078.1.S1_at--855--7771Chr05:9433566..9433590 (25 bp)
GGTGCAGTGTTTAGCTACTGACAGT
LOC_Os05g16660
Os.48078.1.S1_at--384--4851Chr05:9433579..9433603 (25 bp)
GCTACTGACAGTGTACTGCTTCTCA
LOC_Os05g16660
Os.48078.1.S1_at--910--5651Chr05:9433585..9433609 (25 bp)
GACAGTGTACTGCTTCTCAGACATT
LOC_Os05g16660
Os.48078.1.S1_at--437--4911Chr05:9433596..9433620 (25 bp)
GCTTCTCAGACATTCTTGTTGCACT
LOC_Os05g16660
Os.48078.1.S1_at--272--10791Chr05:9433611..9433635 (25 bp)
TTGTTGCACTGGAGATCCAGATTTT
LOC_Os05g16660
Os.48078.1.S1_at--1144--9211Chr05:9433626..9433650 (25 bp)
TCCAGATTTTTAGATGCTCAAGAGA
LOC_Os05g16660
Os.48078.1.S1_at--46--1951Chr05:9433683..9433707 (25 bp)
ACTGCAATACTAGCTTAATTCTGTT
LOC_Os05g16660
Os.48078.1.S1_at--681--1551Chr05:9433694..9433718 (25 bp)
AGCTTAATTCTGTTTTCATCGTTGT
LOC_Os05g16660
Target Sequence 
GCATTTGAGGAAGGCCGAAGGTACCTTTTGGTTGGGAAGATGTTTCATCTCCTGTCATGTGGAAGAGACTAAGGTGCAGT
GTTTAGCTACTGACAGTGTACTGCTTCTCAGACATTCTTGTTGCACTGGAGATCCAGATTTTTAGATGCTCAAGAGATTT
TGTACATTCAGCAATCGAGGGCTCCTTATACTGCAATACTAGCTTAATTCTGTTTTCATCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis