Browse Element(s) Details


Os.26889.1.S1_at

Description gb:AK071141.1
DB_XREF= gi:32981164
TID=Os.26889.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082D02, full insert sequence.
FL= gb:AK059718.1 gb:AK071141.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2813711/11ATPase, AAA family protein, expressed
LOC_Os12g281773/11ATPase, AAA family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28100Os.33173.1.S1_at11/1112+16586357..16593290NB-ARC domain containing protein, expressed
LOC_Os12g28110NANA12+16594618..16596211hypothetical protein
LOC_Os12g28119OsAffx.10439.1.S1_at1/1112+16605383..16608436transposon protein, putative, Mutator sub-class
LOC_Os12g28128OsAffx.22668.2.S1_at11/1112+16609030..16609407hypothetical protein
LOC_Os12g28128OsAffx.22668.1.S1_x_at2/1112+16609030..16609407hypothetical protein
LOC_Os12g28137Os.26889.1.S1_at11/1112+16614033..16616018ATPase, AAA family protein, expressed
LOC_Os12g28150NANA12+16616434..16620306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28159OsAffx.10439.1.S1_at1/1112+16626013..16629066transposon protein, putative, Mutator sub-class
LOC_Os12g28168OsAffx.22668.2.S1_at11/1112+16629660..16630037hypothetical protein
LOC_Os12g28168OsAffx.22668.1.S1_x_at2/1112+16629660..16630037hypothetical protein
LOC_Os12g28177Os.26889.1.S1_at3/1112+16634772..16636304ATPase, AAA family protein
LOC_Os12g28190NANA12+16637064..16643174retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26889.1.S1_at--404--1852Chr12:16636053..16636077 (25 bp)
ACGACTCCGGCAGATGTTGCCGATA
LOC_Os12g28177
Os.26889.1.S1_at--880--5752Chr12:16636146..16636170 (25 bp)
GACGTGGCCGGTAATCACATGCTAC
LOC_Os12g28177
Os.26889.1.S1_at--1033--2472Chr12:16636250..16636274 (25 bp)
AACACCTCCTATGGACACAATCGAG
LOC_Os12g28177
Os.26889.1.S1_at--352--712Chr12:16636335..16636359 (25 bp)
ATGATGAGGGCTGCTACTTCTTGGC
NONE
Os.26889.1.S1_at--525--6852Chr12:16636367..16636391 (25 bp)
GTTTGCGTGTCCTATTTTACCTGAC
NONE
Os.26889.1.S1_at--436--3852Chr12:16636387..16636411 (25 bp)
CTGACTTCCGTGTAATGGTGCGTAC
NONE
Os.26889.1.S1_at--143--9032Chr12:16636405..16636429 (25 bp)
TGCGTACGGGTTTATTAGTCACTTA
NONE
Os.26889.1.S1_at--724--7432Chr12:16636478..16636502 (25 bp)
GTGTATTACGACTTATGTTCTGGAT
NONE
Os.26889.1.S1_at--1002--6712Chr12:16636494..16636518 (25 bp)
GTTCTGGATCTATTATTTCACGCTC
NONE
Os.26889.1.S1_at--165--192Chr12:16636508..16636532 (25 bp)
ATTTCACGCTCCATAATTCGTCTGG
NONE
Os.26889.1.S1_at--1009--7152Chr12:16636527..16636551 (25 bp)
GTCTGGTCAACCTTGTAAATTCTGA
NONE
Target Sequence 
ACGACTCCGGCAGATGTTGCCGATAACCTCATGCCGCGGGGTAAGAGGAACGGTGAAATCAGTCGACTGATCGATGAGAT
CGACGCACCGGCAGACGTGGCCGGTAATCACATGCTACGGTGCAAGAGGAAGAGAGACGCGGACGAGTGCCTGGCAGGTT
TAGTGGAAACACTGAAGAAGGCCAAGATGGAATCAGCAACACCTCCTATGGACACAATCGAGGAAGAGGCCAACAAAGAG
GAACAAACCTAACACAGAAGAAAGCTAGACAGGGGCTGATACATGATGAGGGCTGCTACTTCTTGGCCTCCTCGGTTTGC
GTGTCCTATTTTACCTGACTTCCGTGTAATGGTGCGTACGGGTTTATTAGTCACTTAAGCTAGCATAAGCCATACCATAA
AATGGCAAAATATATAAAAATAGTGGTGTATTACGACTTATGTTCTGGATCTATTATTTCACGCTCCATAATTCGTCTGG
TCAACCTTGTAAATTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis