Browse Element(s) Details


Os.33173.1.S1_at

Description gb:AK101496.1
DB_XREF= gi:32986705
TID=Os.33173.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043F22, full insert sequence.
FL= gb:AK101496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2810011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28060NANA12+16562438..16563151hypothetical protein
LOC_Os12g28070OsAffx.19866.1.S1_at11/1112+16569228..16575498NB-ARC domain containing protein
LOC_Os12g28080OsAffx.31912.1.S1_at11/1112+16578237..16578566hypothetical protein
LOC_Os12g28090Os.55004.1.S1_at11/1112+16579985..16582646expressed protein
LOC_Os12g28100Os.33173.1.S1_at11/1112+16586357..16593290NB-ARC domain containing protein, expressed
LOC_Os12g28110NANA12+16594618..16596211hypothetical protein
LOC_Os12g28119OsAffx.10439.1.S1_at1/1112+16605383..16608436transposon protein, putative, Mutator sub-class
LOC_Os12g28128OsAffx.22668.2.S1_at11/1112+16609030..16609407hypothetical protein
LOC_Os12g28128OsAffx.22668.1.S1_x_at2/1112+16609030..16609407hypothetical protein
LOC_Os12g28137Os.26889.1.S1_at11/1112+16614033..16616018ATPase, AAA family protein, expressed
LOC_Os12g28150NANA12+16616434..16620306retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33173.1.S1_at--1056--5371Chr12:16586933..16586957 (25 bp)
GAAGCTTATCGACTTAGGAGTGGAA
LOC_Os12g28100
Os.33173.1.S1_at--1106--951Chr12:16586876..16586900 (25 bp)
AGGACTGTATCGACATCTTCCTGCA
LOC_Os12g28100
Os.33173.1.S1_at--67--3851Chr12:16586856..16586880 (25 bp)
CTGCACCAACTTCATCCTAGAGAGG
LOC_Os12g28100
Os.33173.1.S1_at--982--2931Chr12:16586811..16586835 (25 bp)
AAGGCGGTCCGGAAGATCAAAGCAA
LOC_Os12g28100
Os.33173.1.S1_at--48--391Chr12:16586796..16586820 (25 bp)
ATCAAAGCAACTATGTGCCTGCCCG
LOC_Os12g28100
Os.33173.1.S1_at--844--2271Chr12:16586766..16586790 (25 bp)
AAATCGCCCTCCAAATTCAAGAACT
LOC_Os12g28100
Os.33173.1.S1_at--306--2751Chr12:16586748..16586772 (25 bp)
AAGAACTCAAGGCACATGTCGATAT
LOC_Os12g28100
Os.33173.1.S1_at--719--6391Chr12:16586719..16586743 (25 bp)
GATCGATGTATCAACCTCTGGCGAT
LOC_Os12g28100
Os.33173.1.S1_at--18--3791Chr12:16586704..16586728 (25 bp)
CTCTGGCGATAGGTTCATAAGGATT
LOC_Os12g28100
Os.33173.1.S1_at--164--8831Chr12:16586679..16586703 (25 bp)
TGATTCCCGATTGTCGTTGCTTTAT
LOC_Os12g28100
Os.33173.1.S1_at--27--2691Chr12:16586650..16586674 (25 bp)
AAGCTGGAGGCCTTGTTGGCATTTG
LOC_Os12g28100
Target Sequence 
GAAGCTTATCGACTTAGGAGTGGAAGGACAAGGTGGGGAACTGGCCTACGATATTGAGGACTGTATCGACATCTTCCTGC
ACCAACTTCATCCTAGAGAGGACAAGGATAGACTGGTCTGGAAGGCGGTCCGGAAGATCAAAGCAACTATGTGCCTGCCC
GCCATCAAATCGCCCTCCAAATTCAAGAACTCAAGGCACATGTCGATATACATGATCGATGTATCAACCTCTGGCGATAG
GTTCATAAGGATTTGATTCCCGATTGTCGTTGCTTTATGCANAAGCTGGAGGCCTTGTTGGCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis