Browse Element(s) Details


Os.55004.1.S1_at

Description gb:AK107289.1
DB_XREF= gi:32992498
TID=Os.55004.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B09, full insert sequence.
FL= gb:AK107289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2809011/11expressed protein
LOC_Os04g143402/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28060NANA12+16562438..16563151hypothetical protein
LOC_Os12g28070OsAffx.19866.1.S1_at11/1112+16569228..16575498NB-ARC domain containing protein
LOC_Os12g28080OsAffx.31912.1.S1_at11/1112+16578237..16578566hypothetical protein
LOC_Os12g28090Os.55004.1.S1_at11/1112+16579985..16582646expressed protein
LOC_Os12g28100Os.33173.1.S1_at11/1112+16586357..16593290NB-ARC domain containing protein, expressed
LOC_Os12g28110NANA12+16594618..16596211hypothetical protein
LOC_Os12g28119OsAffx.10439.1.S1_at1/1112+16605383..16608436transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55004.1.S1_at--876--7592Chr12:16582075..16582099 (25 bp)
GGGCAGAGCACGTATTGTTCATCGC
LOC_Os12g28090
Os.55004.1.S1_at--271--2051Chr12:16582100..16582124 (25 bp)
ACTTACTCTCTGGTGGATGATGGTG
LOC_Os12g28090
Os.55004.1.S1_at--681--7971Chr12:16582156..16582180 (25 bp)
GGATCGGCAGGTTTACAAGCTACGT
LOC_Os12g28090
Os.55004.1.S1_at--449--6832Chr12:16582166..16582190 (25 bp)
GTTTACAAGCTACGTGATCCATCCT
LOC_Os12g28090
Os.55004.1.S1_at--903--8692Chr12:16582180..16582204 (25 bp)
TGATCCATCCTTCTTGGGCGGTTGC
LOC_Os12g28090
Os.55004.1.S1_at--637--7571Chr12:16582195..16582219 (25 bp)
GGGCGGTTGCTCTTTTTTCCATGTA
LOC_Os12g28090
Os.55004.1.S1_at--440--3131Chr12:16582222..16582246 (25 bp)
AATTTCAGAGCCTTTCTTTGCTTCT
LOC_Os12g28090
Os.55004.1.S1_at--444--2511Chr12:16582250..16582274 (25 bp)
AACATCTTCTGATTCGTTGTCAGCG
LOC_Os12g28090
Os.55004.1.S1_at--787--10611Chr12:16582262..16582286 (25 bp)
TTCGTTGTCAGCGTCTATTATATCG
LOC_Os12g28090
Os.55004.1.S1_at--1042--10411Chr12:16582279..16582303 (25 bp)
TTATATCGCTGCTAAGGCCTTGTTT
LOC_Os12g28090
Os.55004.1.S1_at--309--1091Chr12:16582616..16582640 (25 bp)
AGGGCCTAATTCATCAGCAGCTATC
LOC_Os12g28090
Target Sequence 
GGGCAGAGCACGTATTGTTCATCGCACTTACTCTCTGGTGGATGATGGTGAGGACGATTGGGTCGTCATGGTGAAGAAGC
AGGATCGGCAGGTTTACAAGCTACGTGATCCATCCTTCTTGGGCGGTTGCTCTTTTTTCCATGTAAAAATTTCAGAGCCT
TTCTTTGCTTCTTCCAACATCTTCTGATTCGTTGTCAGCGTCTATTATATCGCTGCTAAGGCCTTGTTTAGTTGGGAAAA
AATTTTGGGTTTGGTTGTCACATCAGATATACCGACACACATTTAAGTATTAAACGTAGTCTAATAACAAAACAAATTAC
AGATTTCGCAGAGATGAATTTATTAAGCCTAATTAATCCGTCATTAGCAAATATTTACTGTAACACCATTGTCAAATCAT
GGTGCAATTAGGCTTAAAAGATTCGTCTAGCAATTTACACGCAATCTGTGTAATTGTTTCTTTTCCATACATTAAATGCT
CCATGCATGTGTCCAAATATTCGATGTGACAGTGTAAAAAATTTTGTTTTGGAAACTAAACAGGGCCTAATTCATCAGCA
GCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis