Browse Element(s) Details


OsAffx.19866.1.S1_at

Description tigr:9640.m02701
TID=OsAffx.19866.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2807011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28060NANA12+16562438..16563151hypothetical protein
LOC_Os12g28070OsAffx.19866.1.S1_at11/1112+16569228..16575498NB-ARC domain containing protein
LOC_Os12g28080OsAffx.31912.1.S1_at11/1112+16578237..16578566hypothetical protein
LOC_Os12g28090Os.55004.1.S1_at11/1112+16579985..16582646expressed protein
LOC_Os12g28100Os.33173.1.S1_at11/1112+16586357..16593290NB-ARC domain containing protein, expressed
LOC_Os12g28110NANA12+16594618..16596211hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19866.1.S1_at--155--10391Chr12:16569804..16569828 (25 bp)
TTTTCCATTCCGTGCAACGTATGAT
LOC_Os12g28070
OsAffx.19866.1.S1_at--814--1891Chr12:16569788..16569812 (25 bp)
ACGTATGATTTGTCTCCTGTATGTA
LOC_Os12g28070
OsAffx.19866.1.S1_at--552--9271Chr12:16569774..16569798 (25 bp)
TCCTGTATGTAACCTTTTCCAACTA
LOC_Os12g28070
OsAffx.19866.1.S1_at--837--5311Chr12:16569734..16569758 (25 bp)
GAAGGTAATCGTTTCCAGTTTCCTG
LOC_Os12g28070
OsAffx.19866.1.S1_at--1078--2271Chr12:16569668..16569692 (25 bp)
AAATGCAGCGGTGATCTCGTACTCA
LOC_Os12g28070
OsAffx.19866.1.S1_at--190--471Chr12:16569655..16569679 (25 bp)
ATCTCGTACTCATCGGTGGGTTTCT
LOC_Os12g28070
OsAffx.19866.1.S1_at--786--10711Chr12:16569608..16569632 (25 bp)
TTGCGGCATCTGAGAACTCCATGGA
LOC_Os12g28070
OsAffx.19866.1.S1_at--509--10651Chr12:16569381..16569405 (25 bp)
TTCCCTTAGGGAACTGGGCAGCTGC
LOC_Os12g28070
OsAffx.19866.1.S1_at--161--8551Chr12:16569322..16569346 (25 bp)
TGGAGCACAGACAACCACCCATTGG
LOC_Os12g28070
OsAffx.19866.1.S1_at--119--3651Chr12:16569297..16569321 (25 bp)
CTTCTTGTATAGCTGGTTTCCTCCT
LOC_Os12g28070
OsAffx.19866.1.S1_at--640--9651Chr12:16569261..16569285 (25 bp)
TCAGAAGTTTCACCCTCACATGATA
LOC_Os12g28070
Target Sequence 
TTTTCCATTCCGTGCAACGTATGATTTGTCTCCTGTATGTAACCTTTTCCAACTAAGGTATCTGAAATTGGAAGGTAATC
GTTTCCAGTTTCCTGATACAAGTGGGGAACTGCGATATTTGCAAGTGGTTGACATAAAATGCAGCGGTGATCTCGTACTC
ATCGGTGGGTTTCTGAGTGATGCTTGTTTACCATCATTGCGGCATCTGAGAACTCCATGGAATGCAGAGCTCGGCAGGGG
GATTAACAGGCTGACCTCTATACGTACACTTGAAGAAATTAACTTCTGCAATTGTTCTGTTGAAAACATCCGACATCTTG
GGATGCTGACCAATCTAAGGACGCTTGGTGTCATCTACAATCGCCGTCGAGGCAACGATGAAGATGACCAGACAGATATG
GTAAAGTTTGCTGCTCTTGCCACTTCCCTTAGGGAACTGGGCAGCTGCAACGTCCGCTGTCTAGATTTCAATGTTGCTCT
AATGGAGCACAGACAACCACCCATTGGCTTCTTGTATAGCTGGTTTCCTCCTCCGCAATTCCTTCAGAAGTTTCACCCTC
ACATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis