Browse Element(s) Details


OsAffx.31912.1.S1_at

Description tigr:9640.m02702
TID=OsAffx.31912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2808011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28060NANA12+16562438..16563151hypothetical protein
LOC_Os12g28070OsAffx.19866.1.S1_at11/1112+16569228..16575498NB-ARC domain containing protein
LOC_Os12g28080OsAffx.31912.1.S1_at11/1112+16578237..16578566hypothetical protein
LOC_Os12g28090Os.55004.1.S1_at11/1112+16579985..16582646expressed protein
LOC_Os12g28100Os.33173.1.S1_at11/1112+16586357..16593290NB-ARC domain containing protein, expressed
LOC_Os12g28110NANA12+16594618..16596211hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31912.1.S1_at--410--4291Chr12:16578440..16578464 (25 bp)
CCTCGTGCGCACGTGGATCTGGCGG
LOC_Os12g28080
OsAffx.31912.1.S1_at--1070--7731Chr12:16578342..16578366 (25 bp)
GGTGTGCTCCTCTCTTCGGCGTCTT
LOC_Os12g28080
OsAffx.31912.1.S1_at--493--9571Chr12:16578330..16578354 (25 bp)
TCTTCGGCGTCTTTGGCTTCGAGCC
LOC_Os12g28080
OsAffx.31912.1.S1_at--828--8291Chr12:16578316..16578340 (25 bp)
GGCTTCGAGCCGCCAACCGGGACTT
LOC_Os12g28080
OsAffx.31912.1.S1_at--301--10651Chr12:16578293..16578317 (25 bp)
TTCGCCTACCGCATGATGCTAGCTG
LOC_Os12g28080
OsAffx.31912.1.S1_at--953--1791Chr12:16578286..16578310 (25 bp)
ACCGCATGATGCTAGCTGTGTTGTT
LOC_Os12g28080
OsAffx.31912.1.S1_at--612--711Chr12:16578281..16578305 (25 bp)
ATGATGCTAGCTGTGTTGTTCCTCT
LOC_Os12g28080
OsAffx.31912.1.S1_at--549--631Chr12:16578278..16578302 (25 bp)
ATGCTAGCTGTGTTGTTCCTCTGCA
LOC_Os12g28080
OsAffx.31912.1.S1_at--185--10011Chr12:16578274..16578298 (25 bp)
TAGCTGTGTTGTTCCTCTGCAGCGA
LOC_Os12g28080
OsAffx.31912.1.S1_at--1075--8671Chr12:16578270..16578294 (25 bp)
TGTGTTGTTCCTCTGCAGCGACAGC
LOC_Os12g28080
OsAffx.31912.1.S1_at--345--6651Chr12:16578267..16578291 (25 bp)
GTTGTTCCTCTGCAGCGACAGCGAC
LOC_Os12g28080
Target Sequence 
CCTCGTGCGCACGTGGATCTGGCGGTGGGGAGGGTGTTGGCGACAGCGAGGGCGTCCGCTCTTACCTCCTCAAGGCCATC
AAGTACAAAAACTAAACCGGTGTGCTCCTCTCTTCGGCGTCTTTGGCTTCGAGCCGCCAACCGGGACTTCGCCTACCGCA
TGATGCTAGCTGTGTTGTTCCTCTGCAGCGACAGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis