Browse Element(s) Details


Os.2690.1.S1_a_at

Description gb:AK074028.1
DB_XREF= gi:32984051
TID=Os.2690.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.2690 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for calcium dependent protein kinase 2
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075G20, full insert sequence.
FL= gb:AK074028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3311011/11Calcium-dependent protein kinase, isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33060OsAffx.16536.1.S1_at11/117+19742359..19744536hypothetical protein
LOC_Os07g33070OsAffx.28726.4.S1_x_at2/117+19746295..19746753hypothetical protein
LOC_Os07g33080OsAffx.16937.1.S1_at9/117+19749503..19751997hypothetical protein
LOC_Os07g33090OsAffx.28726.4.S1_x_at11/117+19756747..19757229hypothetical protein
LOC_Os07g33100OsAffx.5509.1.S1_at10/117+19760726..19766881Uncharacterized ACR, COG1590 family protein, expressed
LOC_Os07g33110Os.2690.1.S1_a_at11/117+19767311..19772751Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os07g33120Os.56717.1.S1_at11/117+19777805..19781012expressed protein
LOC_Os07g33130OsAffx.20169.1.S1_at5/117+19781628..19785126retrotransposon protein, putative, unclassified
LOC_Os07g33139NANA7+19788227..19789670NA
LOC_Os07g33150NANA7+19794512..19797363Zinc knuckle family protein
LOC_Os07g33160NANA7+19797703..19798788retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2690.1.S1_a_at--492--2971Chr07:19768143..19768167 (25 bp)
AATGGATCCATCGACTATGTTGAAT
LOC_Os07g33110
Os.2690.1.S1_a_at--300--6651Chr07:19768125..19768149 (25 bp)
GTTGAATTTATCACTGCCACAATGC
LOC_Os07g33110
Os.2690.1.S1_a_at--981--5911Chr07:19768077..19768101 (25 bp)
GAGCATTTGTTTAAGGCATTCCAGT
LOC_Os07g33110
Os.2690.1.S1_a_at--1155--5611Chr07:19767814..19768065 (25 bp)
GACAACAGTGGCTTCATCACAAGAG
LOC_Os07g33110
Os.2690.1.S1_a_at--179--1951Chr07:19767785..19767809 (25 bp)
ACTGGAATCCGCTTTAATCGAGCAT
LOC_Os07g33110
Os.2690.1.S1_a_at--611--911Chr07:19767549..19767573 (25 bp)
AGGCTCAAATAGTCTGTTTCCTTGT
LOC_Os07g33110
Os.2690.1.S1_a_at--548--6451Chr07:19767451..19767475 (25 bp)
GATAAAAGGTTTACCCTGGACGCAG
LOC_Os07g33110
Os.2690.1.S1_a_at--549--3911Chr07:19767436..19767460 (25 bp)
CTGGACGCAGCTTTTGCATTGTTGA
LOC_Os07g33110
Os.2690.1.S1_a_at--169--4451Chr07:19767390..19767414 (25 bp)
GCCTTGCCCGTGTATGGTGTAGTGA
LOC_Os07g33110
Os.2690.1.S1_a_at--689--6931Chr07:19767372..19767396 (25 bp)
GTAGTGATTTGAATGTCCTCCCTTT
LOC_Os07g33110
Os.2690.1.S1_a_at--1151--8991Chr07:19767363..19767387 (25 bp)
TGAATGTCCTCCCTTTTGTAAGTTG
LOC_Os07g33110
Target Sequence 
AATGGATCCATCGACTATGTTGAATTTATCACTGCCACAATGCATAGACACAAGCTCGAAAGAGATGAGCATTTGTTTAA
GGCATTCCAGTATTTTGACAAAGACAACAGTGGCTTCATCACAAGAGATGAACTGGAATCCGCTTTAATCGAGCATGAAA
TGGGCGATACGAGTACCATAAAGGATATTATATCAGAAGTCGACACGGATAATGATGGGAGGATTAACTACGAGGAATTT
TGCGCTATGATGAGAGGAGGGGGGATGCAGCAGCCTATGAGGCTCAAATAGTCTGTTTCCTTGTAGAAAATGATGTACAA
TTACATTAGTAAACTGTTTTCGCCTTCTTTTTTTTGTTCCATGGATGGTAGTCGACGGATAAAAGGTTTACCCTGGACGC
AGCTTTTGCATTGTTGAGATGATTGTGTATATTTTCTTGCCTTGCCCGTGTATGGTGTAGTGATTTGAATGTCCTCCCTT
TTGTAAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2690.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis