Browse Element(s) Details


OsAffx.28726.4.S1_x_at

Description tigr:9635.m03256
TID=OsAffx.28726.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3309011/11hypothetical protein
LOC_Os07g330702/11hypothetical protein
LOC_Os07g328301/11hypothetical protein
LOC_Os07g329901/11hypothetical protein
LOC_Os07g329601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33040OsAffx.28726.3.S1_at11/117+19734760..19735260hypothetical protein
LOC_Os07g33050OsAffx.28725.1.S1_at11/117+19738699..19741162expressed protein
LOC_Os07g33060OsAffx.16536.1.S1_at11/117+19742359..19744536hypothetical protein
LOC_Os07g33070OsAffx.28726.4.S1_x_at2/117+19746295..19746753hypothetical protein
LOC_Os07g33080OsAffx.16937.1.S1_at9/117+19749503..19751997hypothetical protein
LOC_Os07g33090OsAffx.28726.4.S1_x_at11/117+19756747..19757229hypothetical protein
LOC_Os07g33100OsAffx.5509.1.S1_at10/117+19760726..19766881Uncharacterized ACR, COG1590 family protein, expressed
LOC_Os07g33110Os.2690.1.S1_a_at11/117+19767311..19772751Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os07g33120Os.56717.1.S1_at11/117+19777805..19781012expressed protein
LOC_Os07g33130OsAffx.20169.1.S1_at5/117+19781628..19785126retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28726.4.S1_x_at--140--2755Chr07:19756819..19756843 (25 bp)
AAGAAGCCGTCAGGAGGATCGCCGC
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--1096--1651Chr07:19756823..19756847 (25 bp)
AGCCGTCAGGAGGATCGCCGCCCGT
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--134--6391Chr07:19756835..19756859 (25 bp)
GATCGCCGCCCGTCAACAAGATGTC
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--619--9331Chr07:19756837..19756861 (25 bp)
TCGCCGCCCGTCAACAAGATGTCAT
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--878--4151Chr07:19756838..19756862 (25 bp)
CGCCGCCCGTCAACAAGATGTCATC
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--883--4551Chr07:19756873..19756897 (25 bp)
GCGCCAGCAGTGTCCTTCCAGAAGG
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--351--4151Chr07:19756874..19756898 (25 bp)
CGCCAGCAGTGTCCTTCCAGAAGGG
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--938--4411Chr07:19756875..19756899 (25 bp)
GCCAGCAGTGTCCTTCCAGAAGGGC
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--209--1511Chr07:19756878..19756902 (25 bp)
AGCAGTGTCCTTCCAGAAGGGCGAC
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--547--5811Chr07:19756987..19757011 (25 bp)
GACGCCGTCGATGGACACCTCGAGG
LOC_Os07g33090
OsAffx.28726.4.S1_x_at--1115--4592Chr07:19757036..19757060 (25 bp)
GCGACGATCCCTTCCGGACCGTGCT
LOC_Os07g33090
Target Sequence 
AAGAAGCCGTCAGGAGGATCGCCGCCCGTCAACAAGATGTCATCCGCGCCGGCCGCGCCAGCAGTGTCCTTCCAGAAGGG
CGACGAGGTGCGCGTCCGCACGCCGGTGGGGAGGCTAGGGACCACGGCGCTGCGCCTCGTCATGTGGCTCGGCGCGGTCG
TCGTCTCCGACGCCGTCGATGGACACCTCGAGGTCATCTACAACGGCAACTTCCCGCGCGACGATCCCTTCCGGACCGTG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28726.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis