Browse Element(s) Details


OsAffx.28725.1.S1_at

Description tigr:9635.m03252
TID=OsAffx.28725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3305011/11expressed protein
LOC_Os11g346901/11hypothetical protein
LOC_Os11g347001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33000NANA7+19711501..19714641retrotransposon protein, putative, unclassified
LOC_Os07g33010NANA7+19715765..19721920retrotransposon protein, putative, unclassified
LOC_Os07g33020NANA7+19725612..19726449hypothetical protein
LOC_Os07g33030OsAffx.28726.1.S1_at8/117+19730151..19730834hypothetical protein
LOC_Os07g33040OsAffx.28726.3.S1_at11/117+19734760..19735260hypothetical protein
LOC_Os07g33050OsAffx.28725.1.S1_at11/117+19738699..19741162expressed protein
LOC_Os07g33060OsAffx.16536.1.S1_at11/117+19742359..19744536hypothetical protein
LOC_Os07g33070OsAffx.28726.4.S1_x_at2/117+19746295..19746753hypothetical protein
LOC_Os07g33080OsAffx.16937.1.S1_at9/117+19749503..19751997hypothetical protein
LOC_Os07g33090OsAffx.28726.4.S1_x_at11/117+19756747..19757229hypothetical protein
LOC_Os07g33100OsAffx.5509.1.S1_at10/117+19760726..19766881Uncharacterized ACR, COG1590 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28725.1.S1_at--223--10271Chr07:19739412..19739542 (25 bp)
TTTGATTCTTGGATTGGCTCTGCAC
LOC_Os07g33050
OsAffx.28725.1.S1_at--1140--71Chr07:19739315..19739339 (25 bp)
ATTGCCTTGCGGTTATTTCACCTAT
LOC_Os07g33050
OsAffx.28725.1.S1_at--369--2651Chr07:19739128..19739152 (25 bp)
AACCACAGGTTCCTTTGGATGCCAT
LOC_Os07g33050
OsAffx.28725.1.S1_at--705--113Chr11:19827903..19828014 (25 bp)
ATTCTCCGGTCTTTGTGGCACATAA
LOC_Os11g34700
OsAffx.28725.1.S1_at--670--6571Chr07:19738997..19739021 (25 bp)
GATTCTGCGGTGATCTCTGGGAGAT
LOC_Os07g33050
OsAffx.28725.1.S1_at--80--8051Chr07:19738978..19739002 (25 bp)
GGAGATACCATGTATATCCCCTGAT
LOC_Os07g33050
OsAffx.28725.1.S1_at--480--2651Chr07:19738949..19738973 (25 bp)
AAGCCAGAGTATATCGCGCTATCTT
LOC_Os07g33050
OsAffx.28725.1.S1_at--707--6791Chr07:19738919..19738943 (25 bp)
GTATCTTCCGTTCTTGGGACCAGTG
LOC_Os07g33050
OsAffx.28725.1.S1_at--1071--7371Chr07:19738886..19738910 (25 bp)
GTGACCTACCTAGTTCAGCGATATT
LOC_Os07g33050
OsAffx.28725.1.S1_at--936--8771Chr07:19738805..19738829 (25 bp)
TGTTTCCCACCTATCTAAATGCAGC
LOC_Os07g33050
OsAffx.28725.1.S1_at--136--451Chr07:19738737..19738761 (25 bp)
ATGCTAACCGTCTCCATGTAGTTTA
LOC_Os07g33050
Target Sequence 
TTTGATTCTTGGATTGGCTCTGCACGAGTTGAGATGCTATTAATTGATGCTGAGGTGGATTACTGGAAGGAAAGTCTTCT
GAAAACTTGTCAAGTTGATTGCCTTGCGGTTATTTCACCTATTGCAAAGGCTTGCCTTTGGGCAAAATTGGTTAATGATC
CCCTAGAGGATGCTTTACTTGCTCATCCACAAAATTGTCATAAACCACAGGTTCCTTTGGATGCCATTCTCCGGTCTTTG
TGGCACATAAGGAGATTCTGCGGTGATCTCTGGGAGATACCATGTATATCCCCTGATGTTAAAGCCAGAGTATATCGCGC
TATCTTGTTGCGTATCTTCCGTTCTTGGGACCAGTGCAAAACATGTGACCTACCTAGTTCAGCGATATTCATGGTTGATT
CTTTGAGAAGTTTTGTGATTGATGAAAAGGTTTGCGTTCGCTTTCTGTTTCCCACCTATCTAAATGCAGCCTGTGACCTC
AGGGAAAATACCAGAGAGCAACTTTCTTATCAAATGCTAACCGTCTCCATGTAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis