Browse Element(s) Details


OsAffx.28726.1.S1_at

Description tigr:9635.m03250
TID=OsAffx.28726.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g330308/11hypothetical protein
LOC_Os07g329603/11hypothetical protein
LOC_Os07g329903/11hypothetical protein
LOC_Os07g328303/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32990OsAffx.28726.1.S1_at3/117+19707790..19708269hypothetical protein
LOC_Os07g32990OsAffx.28726.3.S1_at1/117+19707790..19708269hypothetical protein
LOC_Os07g32990OsAffx.28726.4.S1_x_at1/117+19707790..19708269hypothetical protein
LOC_Os07g33000NANA7+19711501..19714641retrotransposon protein, putative, unclassified
LOC_Os07g33010NANA7+19715765..19721920retrotransposon protein, putative, unclassified
LOC_Os07g33020NANA7+19725612..19726449hypothetical protein
LOC_Os07g33030OsAffx.28726.1.S1_at8/117+19730151..19730834hypothetical protein
LOC_Os07g33040OsAffx.28726.3.S1_at11/117+19734760..19735260hypothetical protein
LOC_Os07g33050OsAffx.28725.1.S1_at11/117+19738699..19741162expressed protein
LOC_Os07g33060OsAffx.16536.1.S1_at11/117+19742359..19744536hypothetical protein
LOC_Os07g33070OsAffx.28726.4.S1_x_at2/117+19746295..19746753hypothetical protein
LOC_Os07g33080OsAffx.16937.1.S1_at9/117+19749503..19751997hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28726.1.S1_at--132--9752Chr07:19730236..19730260 (25 bp)
TCAATTCCAACTCGGACTCGGCTGG
LOC_Os07g33030
OsAffx.28726.1.S1_at--1006--8112Chr07:19730249..19730273 (25 bp)
GGACTCGGCTGGCTATAAATCCATG
LOC_Os07g33030
OsAffx.28726.1.S1_at--1053--5712Chr07:19730250..19730274 (25 bp)
GACTCGGCTGGCTATAAATCCATGC
LOC_Os07g33030
OsAffx.28726.1.S1_at--737--3772Chr07:19730252..19730276 (25 bp)
CTCGGCTGGCTATAAATCCATGCGC
LOC_Os07g33030
OsAffx.28726.1.S1_at--332--8352Chr07:19730255..19730279 (25 bp)
GGCTGGCTATAAATCCATGCGCGGC
LOC_Os07g33030
OsAffx.28726.1.S1_at--156--8492Chr07:19730258..19730282 (25 bp)
TGGCTATAAATCCATGCGCGGCCGC
LOC_Os07g33030
OsAffx.28726.1.S1_at--348--8312Chr07:19730259..19730283 (25 bp)
GGCTATAAATCCATGCGCGGCCGCC
LOC_Os07g33030
OsAffx.28726.1.S1_at--190--131Chr07:19730289..19730313 (25 bp)
ATTCACCAGCAATTCCTTCCGCCAA
LOC_Os07g33030
OsAffx.28726.1.S1_at--994--1153Chr07:19707879..19707903 (25 bp)
AGTCTCCAAGAAGCCGTCAGGATCA
LOC_Os07g32990
OsAffx.28726.1.S1_at--35--9213Chr07:19707883..19707907 (25 bp)
TCCAAGAAGCCGTCAGGATCAGGAT
LOC_Os07g32990
OsAffx.28726.1.S1_at--915--3233Chr07:19707885..19707909 (25 bp)
CAAGAAGCCGTCAGGATCAGGATCG
LOC_Os07g32990
Target Sequence 
TCAATTCCAACTCGGACTCGGCTGGCTATAAATCCATGCGCGGCCGCCTCCGCATTCACCAGCAATTCCTTCCGCCAATC
CTCGCACTCCCAGCAGCGCTCTCGTCGTCAATGGCGCTTCNCCGCCGCTCGAGTCCCCGCTCCTCGCGCCCGATCATCCA
CCGCCGCANTGAGCTCGCCGTCGAGGCGNAGGGGAGAGTAGTCTCCAAGAAGCCGTCAGGATCAGGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis