Browse Element(s) Details


Os.56717.1.S1_at

Description gb:AK110337.1
DB_XREF= gi:32995546
TID=Os.56717.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-164-F01, full insert sequence.
FL= gb:AK110337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3312011/11expressed protein
LOC_Os10g390803/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33090OsAffx.28726.4.S1_x_at11/117+19756747..19757229hypothetical protein
LOC_Os07g33100OsAffx.5509.1.S1_at10/117+19760726..19766881Uncharacterized ACR, COG1590 family protein, expressed
LOC_Os07g33110Os.2690.1.S1_a_at11/117+19767311..19772751Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os07g33120Os.56717.1.S1_at11/117+19777805..19781012expressed protein
LOC_Os07g33130OsAffx.20169.1.S1_at5/117+19781628..19785126retrotransposon protein, putative, unclassified
LOC_Os07g33139NANA7+19788227..19789670NA
LOC_Os07g33150NANA7+19794512..19797363Zinc knuckle family protein
LOC_Os07g33160NANA7+19797703..19798788retrotransposon protein, putative, unclassified
LOC_Os07g33170Os.10731.1.A1_a_at11/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.3.S1_x_at8/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.3.S1_at7/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170Os.46610.1.S1_x_at5/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.4.S1_x_at4/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.1.S1_at4/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.5.S1_x_at3/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.3.S1_s_at2/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33180NANA7+19804829..19807073retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56717.1.S1_at--329--4111Chr07:19780347..19780367 (21 bp)
CGAATTCGACTCCATTTAGGTGCCG
LOC_Os07g33120
Os.56717.1.S1_at--52--3872Chr07:19780469..19780493 (25 bp)
CTGATGATGCACTGGAGGTCGTTCC
LOC_Os07g33120
Os.56717.1.S1_at--675--1031Chr07:19780484..19780508 (25 bp)
AGGTCGTTCCAATTCCAGTGACTGC
LOC_Os07g33120
Os.56717.1.S1_at--777--2212Chr07:19780679..19780703 (25 bp)
ACAAGACGCAATCGACGCCCTAGTG
LOC_Os07g33120
Os.56717.1.S1_at--317--10071Chr07:19780699..19780723 (25 bp)
TAGTGCAGCTGGTCGGCTTTGACAA
LOC_Os07g33120
Os.56717.1.S1_at--941--8131Chr07:19780742..19780766 (25 bp)
GGACATGGCTCTGGCGAATTACCTA
LOC_Os07g33120
Os.56717.1.S1_at--235--1152Chr07:19780842..19780866 (25 bp)
AGTCCTCTGTCTCCATGTATCGATT
LOC_Os07g33120
Os.56717.1.S1_at--428--751Chr07:19780856..19780880 (25 bp)
ATGTATCGATTTCCTTTGCTTCCTT
LOC_Os07g33120
Os.56717.1.S1_at--292--10731Chr07:19780871..19780895 (25 bp)
TTGCTTCCTTCGTATCCGCGTGAGA
LOC_Os07g33120
Os.56717.1.S1_at--143--9451Chr07:19780897..19780921 (25 bp)
TCGGACGCGCGCTACCGTTAAGAGG
LOC_Os07g33120
Os.56717.1.S1_at--262--1412Chr07:19780934..19780958 (25 bp)
AGACATTGCTACTCCGCTATTCGCA
LOC_Os07g33120
Target Sequence 
CGAATTCGACTCCATTTAGGTGCCGATCCCCCCTGATGATGCACTGGAGGTCGTTCCAATTCCAGTGACTGCTGACATGC
TGGGTGAAGGACGGCAGAGGAGTCCAAGGCTGGCCCGACAGCCGATGGCTGGCCTACCGATGTCGCTGCGGGCGCAGCTC
AATCTCTGCCGGCGCCTGGGTACGGTTCCAACGGAAGGAGTCCTCACCGACAAGGCACTCGCCGACTTCAAAGCGATGTT
CAACAAGACGCAATCGACGCCCTAGTGCAGCTGGTCGGCTTTGACAAGGAAGACGCGAAGGCGGCGGACATGGCTCTGGC
GAATTACCTAGGCCCCTCTGACATTGGCTGCCAGGAGGAGATTGCTGCGGCGTGAGCAAGCTGTGCTCTGCGCACCGGCA
AACGGAGTCCTCTGTCTCCATGTATCGATTTCCTTTGCTTCCTTCGTATCCGCGTGAGACTCGGACGCGCGCTACCGTTA
AGAGGGGCGGCATCGCCAGACATTGCTACTCCGCTATTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis