Browse Element(s) Details


Os.27035.2.S1_s_at

Description gb:AK068876.1
DB_XREF= gi:32978901
TID=Os.27035.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptidylprolyl isomerase (P0468H06.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170E02, full insert sequence.
FL= gb:AK068876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3822911/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g529601/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38190Os.10335.1.S1_at11/111+21719090..21720564expressed protein
LOC_Os01g38200NANA1+21726740..21727337hypothetical protein
LOC_Os01g38229Os.27035.1.S1_s_at11/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229Os.27035.2.S1_s_at11/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229Os.27035.1.S1_a_at11/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229Os.27035.3.S1_at10/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229OsAffx.23552.1.S1_at8/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38260OsAffx.1646.1.S1_x_at1/111+21790960..21793192retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27035.2.S1_s_at--561--9531Chr01:21767958..21767982 (25 bp)
TCTACTCCTAGTACTGCTCCCAGTA
LOC_Os01g38229
Os.27035.2.S1_s_at--301--5451Chr01:21768008..21768032 (25 bp)
GAACGCCCTCGCTACTGGCACTAGT
LOC_Os01g38229
Os.27035.2.S1_s_at--173--4851Chr01:21768018..21768042 (25 bp)
GCTACTGGCACTAGTGGCACCCCGA
LOC_Os01g38229
Os.27035.2.S1_s_at--298--8251Chr01:21768024..21768048 (25 bp)
GGCACTAGTGGCACCCCGAGCGGCA
LOC_Os01g38229
Os.27035.2.S1_s_at--792--8252Chr04:31330881..31331058 (25 bp)
GGCAGCGCTGCTCAAAGCTCAGGAA
LOC_Os04g52960
Os.27035.2.S1_s_at--1047--9071Chr01:21768053..21768077 (25 bp)
TGCTCAAAGCTCAGGAACAATCAAC
LOC_Os01g38229
Os.27035.2.S1_s_at--926--5491Chr01:21768067..21768091 (25 bp)
GAACAATCAACACGAACCGCGGGTT
LOC_Os01g38229
Os.27035.2.S1_s_at--499--5431Chr01:21768080..21768104 (25 bp)
GAACCGCGGGTTTCTATTCAGATGC
LOC_Os01g38229
Os.27035.2.S1_s_at--463--6831Chr01:21768089..21768113 (25 bp)
GTTTCTATTCAGATGCTTCGGGCCA
LOC_Os01g38229
Os.27035.2.S1_s_at--842--10211Chr01:21768094..21768118 (25 bp)
TATTCAGATGCTTCGGGCCATCGCC
LOC_Os01g38229
Os.27035.2.S1_s_at--705--6331Chr01:21768100..21768124 (25 bp)
GATGCTTCGGGCCATCGCCCACGAG
LOC_Os01g38229
Target Sequence 
TCTACTCCTAGTACTGCTCCCAGTACTCCCAACCCTGCTACACCACAGACGAACGCCCTCGCTACTGGCACTAGTGGCAC
CCCGAGCGGCAGCGCTGCTCAAAGCTCAGGAACAATCAACACGAACCGCGGGTTTCTATTCAGATGCTTCGGGCCATCGC
CCACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27035.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis