Browse Element(s) Details


OsAffx.23552.1.S1_at

Description tigr:9629.m03628
TID=OsAffx.23552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g382298/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38190Os.10335.1.S1_at11/111+21719090..21720564expressed protein
LOC_Os01g38200NANA1+21726740..21727337hypothetical protein
LOC_Os01g38229Os.27035.1.S1_s_at11/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229Os.27035.2.S1_s_at11/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229Os.27035.1.S1_a_at11/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229Os.27035.3.S1_at10/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229OsAffx.23552.1.S1_at8/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38260OsAffx.1646.1.S1_x_at1/111+21790960..21793192retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23552.1.S1_at--708--11NONE
ATTCAAAATTGAAAGGTACCTGCGG
NONE
OsAffx.23552.1.S1_at--172--6971Chr01:21765004..21765028 (25 bp)
GTACCTGCGGTACAAATACTAACAA
LOC_Os01g38229
OsAffx.23552.1.S1_at--227--4271Chr01:21765007..21765031 (25 bp)
CCTGCGGTACAAATACTAACAAAGT
LOC_Os01g38229
OsAffx.23552.1.S1_at--513--3291Chr01:21765026..21765050 (25 bp)
CAAAGTAACAATACAGGTGCTGAAC
LOC_Os01g38229
OsAffx.23552.1.S1_at--420--7051Chr01:21765030..21765054 (25 bp)
GTAACAATACAGGTGCTGAACTACG
LOC_Os01g38229
OsAffx.23552.1.S1_at--475--3391Chr01:21765138..21765267 (25 bp)
CAGCGAGGCTTTGAGATGCACGTAA
LOC_Os01g38229
OsAffx.23552.1.S1_at--584--4031Chr01:21765141..21765270 (25 bp)
CGAGGCTTTGAGATGCACGTAATTA
LOC_Os01g38229
OsAffx.23552.1.S1_at--121--8311Chr01:21765144..21765273 (25 bp)
GGCTTTGAGATGCACGTAATTATTA
LOC_Os01g38229
OsAffx.23552.1.S1_at--476--7071Chr01:21765264..21765288 (25 bp)
GTAATTATTACAATACTGTCTGCTA
LOC_Os01g38229
OsAffx.23552.1.S1_at--474--9911NONE
TACTGTCTGCTAAACAATTCCCACC
NONE
OsAffx.23552.1.S1_at--710--7171NONE
GTCTGCTAAACAATTCCCACCAGAG
NONE
Target Sequence 
ATTCAAAATTGAAAGGTACCTGCGGTACAAATACTAACAAAGTAACAATACAGGTGCTGAACTACGATGTGGCTAATGTG
CAAGCCCAGCAGCAGCAAACGTTGTTGCAGGAATTTCCTGATGGTTCCTCAAGAGACCCGGACGCAATGCAGCGAGGCTT
TGAGATGCACGTAATTATTACAATACTGTCTGCTAAACAATTCCCACCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis