Browse Element(s) Details


Os.10335.1.S1_at

Description gb:AK061217.1
DB_XREF= gi:32971235
TID=Os.10335.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0496H05.27 (P0496H05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E06, full insert sequence.
FL= gb:AK061217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38150OsAffx.20387.1.S1_x_at1/111+21692821..21696228retrotransposon protein, putative, unclassified
LOC_Os01g38160NANA1+21700060..21702347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38170NANA1+21703371..21706860retrotransposon protein, putative, unclassified
LOC_Os01g38180Os.34171.2.S1_x_at11/111+21708731..21716489peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38180Os.34171.1.S1_at10/111+21708731..21716489peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38180OsAffx.11754.1.S1_at1/111+21708731..21716489peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38190Os.10335.1.S1_at11/111+21719090..21720564expressed protein
LOC_Os01g38200NANA1+21726740..21727337hypothetical protein
LOC_Os01g38229Os.27035.1.S1_s_at11/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229Os.27035.2.S1_s_at11/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229Os.27035.1.S1_a_at11/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229Os.27035.3.S1_at10/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38229OsAffx.23552.1.S1_at8/111+21741842..21768293peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10335.1.S1_at--1030--7291Chr01:21719511..21719535 (25 bp)
GTGCTGGAGAACATGCTGGCCAACG
LOC_Os01g38190
Os.10335.1.S1_at--474--5491Chr01:21719503..21719527 (25 bp)
GAACATGCTGGCCAACGACGACGAT
LOC_Os01g38190
Os.10335.1.S1_at--862--7191Chr01:21719415..21719439 (25 bp)
GTCGGGCTCTACAAGGACGTGGACC
LOC_Os01g38190
Os.10335.1.S1_at--299--2231Chr01:21719405..21719429 (25 bp)
ACAAGGACGTGGACCGCTACTGCGG
LOC_Os01g38190
Os.10335.1.S1_at--623--9411Chr01:21719288..21719312 (25 bp)
TCGTGCTCGCAGTTATGCAGACCTA
LOC_Os01g38190
Os.10335.1.S1_at--717--10131Chr01:21719275..21719299 (25 bp)
TATGCAGACCTACTTCACCATGTTT
LOC_Os01g38190
Os.10335.1.S1_at--1083--4291Chr01:21719267..21719291 (25 bp)
CCTACTTCACCATGTTTCCATTGAA
LOC_Os01g38190
Os.10335.1.S1_at--869--10471Chr01:21719223..21719247 (25 bp)
TTAAGCACAATCACACAGTTGAGAG
LOC_Os01g38190
Os.10335.1.S1_at--1054--5991Chr01:21719203..21719227 (25 bp)
GAGAGTTGTAAAATCTCTACTCCCA
LOC_Os01g38190
Os.10335.1.S1_at--1145--9511Chr01:21719190..21719214 (25 bp)
TCTCTACTCCCATTGTTTCAGGGTA
LOC_Os01g38190
Os.10335.1.S1_at--322--9871Chr01:21719095..21719119 (25 bp)
TACATCCGTCCTCTAATATAAGATA
LOC_Os01g38190
Target Sequence 
GTGCTGGAGAACATGCTGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACCTCGGCGACTGTGGCGCCGTCAACCA
CGACAGCCACGCCTTCGTCGGGCTCTACAAGGACGTGGACCGCTACTGCGGGACATGGTGGCGGAGGAAGACGGCGGCGC
TCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATG
CAGACCTACTTCACCATGTTTCCATTGAAAAAAGGGNTGAATTTGGTAATTAAGCACAATCACACAGTTGAGAGTTGTAA
AATCTCTACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTCAAACTGCTTTAATTTTGANNAANNNN
NNANANANAAGTATTACTACATCCGTCCTCTAATATAAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis