Browse Element(s) Details


Os.27036.1.S1_at

Description gb:AK067041.1
DB_XREF= gi:32977059
TID=Os.27036.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092H22, full insert sequence.
FL= gb:AK067041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2422011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24180Os.11329.1.S1_at11/114+13810029..13816528DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os04g24190OsAffx.28985.2.S1_at11/114+13819076..13821680hypothetical protein
LOC_Os04g24190OsAffx.28985.2.S1_x_at11/114+13819076..13821680hypothetical protein
LOC_Os04g24190OsAffx.27547.1.S1_x_at1/114+13819076..13821680hypothetical protein
LOC_Os04g24200OsAffx.26123.1.S1_at11/114+13822043..13824201hypothetical protein
LOC_Os04g24210NANA4+13829988..13833948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24220Os.27036.1.S1_at11/114+13838508..13843546Protein kinase domain containing protein, expressed
LOC_Os04g24230NANA4+13846571..13849664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24240Os.47463.1.S1_x_at6/114+13851290..13856604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24240Os.14491.2.S1_x_at5/114+13851290..13856604transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27036.1.S1_at--769--6031Chr04:13842976..13843000 (25 bp)
GAGATGCAGCCTTTGCTATGTACAA
LOC_Os04g24220
Os.27036.1.S1_at--355--1571Chr04:13843008..13843032 (25 bp)
AGCTAGTTGTGCATCATTGGCGATT
LOC_Os04g24220
Os.27036.1.S1_at--380--7371Chr04:13843040..13843064 (25 bp)
GTGACAGTTATAACCCTGAGTCTCA
LOC_Os04g24220
Os.27036.1.S1_at--630--10051Chr04:13843101..13843125 (25 bp)
TAGTTCATCAGTTGGGTTGCCACGG
LOC_Os04g24220
Os.27036.1.S1_at--922--7671Chr04:13843114..13843138 (25 bp)
GGGTTGCCACGGTAAGTTGCTCAGA
LOC_Os04g24220
Os.27036.1.S1_at--603--6671Chr04:13843129..13843153 (25 bp)
GTTGCTCAGAGCCATGCTATAATAT
LOC_Os04g24220
Os.27036.1.S1_at--27--7051Chr04:13843270..13843294 (25 bp)
GTACAATTCCTTTTATATCTCTTAG
LOC_Os04g24220
Os.27036.1.S1_at--17--1151Chr04:13843344..13843368 (25 bp)
AGTCTGATGCGCTATTATGCTGATA
LOC_Os04g24220
Os.27036.1.S1_at--418--3891Chr04:13843369..13843393 (25 bp)
CTGTGATTGCTCATAACATGCGTAC
LOC_Os04g24220
Os.27036.1.S1_at--332--2111Chr04:13843384..13843408 (25 bp)
ACATGCGTACACTTCTTTGTTATGA
LOC_Os04g24220
Os.27036.1.S1_at--504--3571Chr04:13843415..13843439 (25 bp)
CATACTTCCAATGTGGGTGTTTCAA
LOC_Os04g24220
Target Sequence 
GAGATGCAGCCTTTGCTATGTACAAGATCTGAAGCTAGTTGTGCATCATTGGCGATTAACTTGGGTGACAGTTATAACCC
TGAGTCTCAAAGTAGCCACAAATGCTATAGCTTGGAGCAAGAGTTTAGTTCATCAGTTGGGTTGCCACGGTAAGTTGCTC
AGAGCCATGCTATAATATGAAATTCAATTGAGCTGTGGAGGAAAATGATTGGATGTTTTCAGATCTAGACAGGTCTGAAA
TGTATCAACTCCTCAATGTGGTCTACCATTTTATTAATTATTATCCCAAATAATGTACAATTCCTTTTATATCTCTTAGG
TACCAAGTATCATGTATGCTAGAGCACTTGTTTATAAACAACAGGATTAGTCTGATGCGCTATTATGCTGATACTGTGAT
TGCTCATAACATGCGTACACTTCTTTGTTATGAGAAGCACATACTTCCAATGTGGGTGTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis