Browse Element(s) Details


Os.27072.1.S1_at

Description gb:AK120743.1
DB_XREF= gi:37990366
TID=Os.27072.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004D13, full insert sequence.
FL= gb:AK120743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g167909/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed
LOC_Os03g16770OsAffx.12885.1.S1_at11/113+9272855..9274164hypothetical protein
LOC_Os03g16780Os.11179.1.S1_at11/113+9275906..9279030ankyrin repeat family protein, putative, expressed
LOC_Os03g16790Os.27072.1.S1_at9/113+9286561..9291731DHHC zinc finger domain containing protein, expressed
LOC_Os03g16800Os.6755.1.S1_a_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed
LOC_Os03g16800Os.6755.1.S1_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed
LOC_Os03g16812NANA3+9304811..9305068hypothetical protein
LOC_Os03g16824Os.24261.2.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed
LOC_Os03g16824Os.24261.1.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27072.1.S1_at--736--491Chr03:9291163..9291187 (25 bp)
ATCGGACGTGATTTGGGCGTTCCAC
LOC_Os03g16790
Os.27072.1.S1_at--587--1731Chr03:9291303..9291327 (25 bp)
ACCATGTCGTTCTGTCGTGCTGAAA
LOC_Os03g16790
Os.27072.1.S1_at--1083--791Chr03:9291359..9291383 (25 bp)
ATGGGCTGGCTGAGTCTGCAGATCA
LOC_Os03g16790
Os.27072.1.S1_at--1--8611Chr03:9291399..9291423 (25 bp)
TGGTCCAAGTGTTCTGCTGTCATCT
LOC_Os03g16790
Os.27072.1.S1_at--1099--1891Chr03:9291501..9291525 (25 bp)
ACGTGCTGCTTATCTTACCGGGTCA
LOC_Os03g16790
Os.27072.1.S1_at--799--9951Chr03:9291516..9291540 (25 bp)
TACCGGGTCAGGTTGTCGCCGTCAA
LOC_Os03g16790
Os.27072.1.S1_at--522--2791NONE
AAGAGTGGGCATGCTTTGCCGAGTC
NONE
Os.27072.1.S1_at--1043--10691NONE
TTGCCGAGTCAGGAAAGCGCGCACT
NONE
Os.27072.1.S1_at--1161--2411Chr03:9291601..9291625 (25 bp)
AAAACCCTCAGCTTTAGTAGCCAGC
LOC_Os03g16790
Os.27072.1.S1_at--745--10751Chr03:9291646..9291670 (25 bp)
TTGACACATTCTTTACCCATTACTC
LOC_Os03g16790
Os.27072.1.S1_at--141--10351Chr03:9291678..9291702 (25 bp)
TTTATACTCGTACAGCTCCTTTAAC
LOC_Os03g16790
Target Sequence 
ATCGGACGTGATTTGGGCGTTCCACCCAAGTACATACATCTTGTAACTCTAGAAAATGATTCATTGTGTGGATTGAAGGA
ATACACATCGTATTCCTGCAAGCAATATTTTGATGCTTTGAGGTGCCNGTATATTTTCTGACCATGTCGTTCTGTCGTGC
TGAAATCTTGAGGTAGGATCCAGCAATTAGGCAAAGATGGGCTGGCTGAGTCTGCAGATCAGGATGGAGGTTTACTTGGT
CCAAGTGTTCTGCTGTCATCTTCTCAGCCGCCACTAGAAATTATCGTAAGAAAAGGATGTTCCAAGGCGTGGAATGGCCA
AAGCCCAAATTGACAGCGACGTGCTGCTTATCTTACCGGGTCAGGTTGTCGCCGTCAAGAAGAGTGGGCATGCTTTGCCG
AGTCAGGAAAGCGCGCACTCAGTTTTCCCAGTAAACCCAAAACCCTCAGCTTTAGTAGCCAGCTTTTATTAGTACGTGAA
TCATTGACACATTCTTTACCCATTACTCATCATACTTTATACTCGTACAGCTCCTTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis