Browse Element(s) Details


Os.27160.1.A1_at

Description gb:CB644318
DB_XREF= gi:29639309
DB_XREF=OSJNEb05H13.r
CLONE=OSJNEb05H13
TID=Os.27160.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27160 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181853.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2342011/11expressed protein
LOC_Os06g136903/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23370NANA5+13264549..13274493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23380NANA5+13275129..13281284transposon protein, putative, unclassified
LOC_Os05g23389NANA5+13285416..13285617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23398Os.55750.1.S1_at10/115+13293828..13294563expressed protein
LOC_Os05g23410OsAffx.26980.1.S1_at11/115+13295040..13296349hypothetical protein
LOC_Os05g23420Os.27160.1.A1_at11/115+13296340..13305270expressed protein
LOC_Os05g23430NANA5+13307596..13312457expressed protein
LOC_Os05g23440Os.47824.1.S1_at11/115+13327246..13332725anthocyanin-related membrane protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27160.1.A1_at--817--5211Chr05:13302404..13302428 (25 bp)
GAATTCATAACATGTTCCCTCCAGA
LOC_Os05g23420
Os.27160.1.A1_at--767--10091Chr05:13300490..13300514 (25 bp)
TAGGAGCATCTGTACTGCTGGTAAT
LOC_Os05g23420
Os.27160.1.A1_at--625--10871Chr05:13296736..13297048 (25 bp)
TTGGCCTGAGCTTACCAGATCAATG
LOC_Os05g23420
Os.27160.1.A1_at--243--633Chr12:2314682..2314706 (25 bp)
ATGCTGCTGGAGGACTCATTCTGTC
NONE
Os.27160.1.A1_at--931--7253Chr12:2314704..2314728 (25 bp)
GTCCATATTTTTCTAGTTCCAACTT
NONE
Os.27160.1.A1_at--338--10711Chr05:13296651..13296675 (25 bp)
TTGCGACAACTCTATTCGGAGTCTC
LOC_Os05g23420
Os.27160.1.A1_at--898--9433Chr12:2314748..2314771 (24 bp)
TCGGAGTCTCGAAGCCACCAAAAAA
NONE
Os.27160.1.A1_at--338--6052Chr12:2314789..2314808 (20 bp)
GAGATTTTGGCATCCTCAGCCATCA
NONE
Os.27160.1.A1_at--1053--891Chr05:13296522..13296546 (25 bp)
AGGCGGAACATGTTGTCCCCAAGAA
LOC_Os05g23420
Os.27160.1.A1_at--569--5631Chr05:13296486..13296510 (25 bp)
GACACATCATTTGTTCTCCGTGGCA
LOC_Os05g23420
Os.27160.1.A1_at--164--9511Chr05:13296472..13296496 (25 bp)
TCTCCGTGGCATCCGATTTTGATAC
LOC_Os05g23420
Target Sequence 
GAATTCATAACATGTTCCCTCCAGAGGAAAATTCTGCGGAAATGGAAATGGTTGCTGGTGGACTTAAGAAGAATTTACAA
GTTGCGGAAAGGGTTCATCTCTTATCTCTATATAGGAGCATCTGTACTGCTGGTAATATCAGAACTGNTGCAGAAGCTCT
TGGCCTGAGCTTACCAGATCAATGAGAATGCAGATGCTGCTGGAGGACTCATTCTGTCCATATTTTTCTAGTTCCAACTT
CTAATTGCGACAACTCTATTCGGAGTCTCGAAGCCACCAAAAAAGATTGGTAGTGGGAGATTTTGGCATCCTCAGCCATC
AGGTCTCCAGAAGATGCTGATTCAGGAGCGAAGCAAACCACAGGAACAGTTCCAGGCGGAACATGTTGTCCCCAAGAAAG
AATGATACCGACACATCATTTGTTCTCCGTGGCATCCGATTTTGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27160.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis