Browse Element(s) Details


OsAffx.26980.1.S1_at

Description tigr:9633.m02074
TID=OsAffx.26980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2341011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23370NANA5+13264549..13274493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23380NANA5+13275129..13281284transposon protein, putative, unclassified
LOC_Os05g23389NANA5+13285416..13285617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23398Os.55750.1.S1_at10/115+13293828..13294563expressed protein
LOC_Os05g23410OsAffx.26980.1.S1_at11/115+13295040..13296349hypothetical protein
LOC_Os05g23420Os.27160.1.A1_at11/115+13296340..13305270expressed protein
LOC_Os05g23430NANA5+13307596..13312457expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26980.1.S1_at--1118--9351Chr05:13295168..13295187 (20 bp)
TCGAAGCGGAGCTCACCAAGTCGGG
LOC_Os05g23410
OsAffx.26980.1.S1_at--771--7631Chr05:13295997..13296021 (25 bp)
GGGAGCGTTCATGGCAAAACCCAAA
LOC_Os05g23410
OsAffx.26980.1.S1_at--837--2371Chr05:13296013..13296037 (25 bp)
AAACCCAAAGACCACTCCATGGATG
LOC_Os05g23410
OsAffx.26980.1.S1_at--990--6511Chr05:13296038..13296062 (25 bp)
GATTTGGCCAGAATCCATGGAAAAG
LOC_Os05g23410
OsAffx.26980.1.S1_at--783--5971Chr05:13296074..13296098 (25 bp)
GAGAAACACGATGCTGATGAACTAC
LOC_Os05g23410
OsAffx.26980.1.S1_at--909--8151Chr05:13296168..13296192 (25 bp)
GGCAACCGGAACCACCGGAATTGAT
LOC_Os05g23410
OsAffx.26980.1.S1_at--325--7951Chr05:13296217..13296241 (25 bp)
GGACCTCCTTTATCGCCTGGAGAGA
LOC_Os05g23410
OsAffx.26980.1.S1_at--993--6011Chr05:13296238..13296262 (25 bp)
GAGAGGACACCGACAGGGACAGAAA
LOC_Os05g23410
OsAffx.26980.1.S1_at--1118--1351Chr05:13296258..13296282 (25 bp)
AGAAAGTCCCCTCAGGCCGTACTGT
LOC_Os05g23410
OsAffx.26980.1.S1_at--29--8411Chr05:13296272..13296296 (25 bp)
GGCCGTACTGTAAAATGGATCGCAA
LOC_Os05g23410
OsAffx.26980.1.S1_at--1155--2951Chr05:13296285..13296309 (25 bp)
AATGGATCGCAATTTTCAACCTTGA
LOC_Os05g23410
Target Sequence 
TCGAAGCGGAGCTCACCAAGTCGGGGAGCGTTCATGGCAAAACCCAAAGACCACTCCATGGATGGATTTGGCCAGAATCC
ATGGAAAAGAACTGGGACAAGAGAAACACGATGCTGATGAACTACACAAAAGCACCAAAGAAGAAGAGAAAACAATTAGG
GTACGGGAAGAACTATACCCCCTTCCCCATTGCCGGCAACCGGAACCACCGGAATTGATAAAGGAAAGGGGCCGGACGGA
GAGGGACCTCCTTTATCGCCTGGAGAGAGGACACCGACAGGGACAGAAAGTCCCCTCAGGCCGTACTGTAAAATGGATCG
CAATTTTCAACCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis