Browse Element(s) Details


Os.55750.1.S1_at

Description gb:AK108720.1
DB_XREF= gi:32993929
TID=Os.55750.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-C01, full insert sequence.
FL= gb:AK108720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2339810/11expressed protein
LOC_Os09g181591/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23370NANA5+13264549..13274493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23380NANA5+13275129..13281284transposon protein, putative, unclassified
LOC_Os05g23389NANA5+13285416..13285617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23398Os.55750.1.S1_at10/115+13293828..13294563expressed protein
LOC_Os05g23410OsAffx.26980.1.S1_at11/115+13295040..13296349hypothetical protein
LOC_Os05g23420Os.27160.1.A1_at11/115+13296340..13305270expressed protein
LOC_Os05g23430NANA5+13307596..13312457expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55750.1.S1_at--137--8391Chr05:13294039..13294063 (25 bp)
GGCGACGCCTTGATCTGGGCGACTA
LOC_Os05g23398
Os.55750.1.S1_at--698--3891Chr05:13294053..13294077 (25 bp)
CTGGGCGACTAGGTAAGATCATGTG
LOC_Os05g23398
Os.55750.1.S1_at--926--6211Chr05:13294126..13294150 (25 bp)
GAGGCGATGTGAGCGATCTATCTGT
LOC_Os05g23398
Os.55750.1.S1_at--843--431Chr05:13294141..13294165 (25 bp)
ATCTATCTGTCGCAGAGGCGGTTGA
LOC_Os05g23398
Os.55750.1.S1_at--744--5791Chr05:13294287..13294311 (25 bp)
GACGCACGACAAGGCACCATGCGGG
LOC_Os05g23398
Os.55750.1.S1_at--906--2691NONE
AAGCTCTGGGTCAGTGCAGCGGATT
NONE
Os.55750.1.S1_at--745--10591Chr05:13294361..13294385 (25 bp)
TTCCGGTGGTACATCGAGCTCGAGG
LOC_Os05g23398
Os.55750.1.S1_at--1015--3851Chr05:13294428..13294452 (25 bp)
CTGTTGTTTTCGCTGGATTTTTCTC
LOC_Os05g23398
Os.55750.1.S1_at--783--4111Chr05:13294438..13294462 (25 bp)
CGCTGGATTTTTCTCGCTCTTTTTT
LOC_Os05g23398
Os.55750.1.S1_at--321--9492Chr05:13294493..13294517 (25 bp)
TCTGCTCCCGACTGTTCTAGATGAG
LOC_Os05g23398
Os.55750.1.S1_at--545--6731Chr05:13294506..13294530 (25 bp)
GTTCTAGATGAGGTCGTGCATTTTT
LOC_Os05g23398
Target Sequence 
GGCGACGCCTTGATCTGGGCGACTAGGTAAGATCATGTGAGGTCACGGTGGTGGCGGAAGCGGCGAGCCGGCGAGGAGGT
TGTCGAGGAGGCGATGTGAGCGATCTATCTGTCGCAGAGGCGGTTGAGGCTGGCGACGAGAAGGATGGTGTCGAGCCGAG
CTGTTCCCCATGGATATGGCGATGGCGTGGACCCCCGCCGCCCCTACTCCTCGCTCCGAGGCGGCGCTGGCCGGTGAGCT
CCGGGGCCGACGCACGACAAGGCACCATGCGGGCCGGCAAGCTCTGGGTCAGTGCAGCGGATTAAGGCTGGGCGGGGCCT
TCTTCCGGTGGTACATCGAGCTCGAGGTCATCGTCCCGGCATGGAGATCAGGCGAGGGGAATATACAATCTGTTGTTTTC
GCTGGATTTTTCTCGCTCTTTTTTTTTTTGCTTTTTTTTTCTAGGAGTTTTTCCTCTGCTCCCGACTGTTCTAGATGAGG
TCGTGCATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis