Browse Element(s) Details


Os.27209.1.S1_at

Description gb:AK109941.1
DB_XREF= gi:32995150
TID=Os.27209.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E04, full insert sequence.
FL= gb:AK109941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6190011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61870OsAffx.2382.1.S1_x_at11/111+36134616..36135137hypothetical protein
LOC_Os01g61880Os.5404.3.S1_a_at11/111+36139998..36145413respiratory burst oxidase homolog, putative, expressed
LOC_Os01g61890Os.5404.4.S1_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S1_a_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.4.S1_x_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S2_at10/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61900Os.27209.1.S1_at11/111+36153984..36155621CCT motif family protein, expressed
LOC_Os01g61910Os.8181.1.S1_at11/111+36159821..36162884expressed protein
LOC_Os01g61920NANA1+36167388..36168113Histone H4, putative, expressed
LOC_Os01g61930Os.35165.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61930Os.8716.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010182biological_processsugar mediated signaling
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27209.1.S1_at--1038--8971Chr01:36154363..36154387 (25 bp)
TGAACCTCGCCTCGTAGTACGCTGT
LOC_Os01g61900
Os.27209.1.S1_at--132--5891Chr01:36154323..36154347 (25 bp)
GAGCGAACGATCGAGCTGGAGATCT
LOC_Os01g61900
Os.27209.1.S1_at--816--9371Chr01:36154313..36154337 (25 bp)
TCGAGCTGGAGATCTACCGGCGCGT
LOC_Os01g61900
Os.27209.1.S1_at--698--7752Chr07:11362577..11362596 (20 bp)
GGTGTTCGAGCACGAGCACGCACTA
NONE
Os.27209.1.S1_at--322--1511Chr01:36154240..36154264 (25 bp)
AGCACGCACTAGCTAGCTCAGGGTG
LOC_Os01g61900
Os.27209.1.S1_at--427--7111Chr01:36154127..36154151 (25 bp)
GTCAGAGTGGCGTCGTTGACCTTCC
LOC_Os01g61900
Os.27209.1.S1_at--595--7211Chr01:36154116..36154140 (25 bp)
GTCGTTGACCTTCCCTTGTGTGTAG
LOC_Os01g61900
Os.27209.1.S1_at--590--10211Chr01:36154091..36154115 (25 bp)
TATTATTGTAACTTTCGCCAGAAAC
LOC_Os01g61900
Os.27209.1.S1_at--647--5531Chr01:36154071..36154095 (25 bp)
GAAACATCATGAAAGCTGGGAAACG
LOC_Os01g61900
Os.27209.1.S1_at--124--1431Chr01:36154019..36154043 (25 bp)
AGAAACCTTCTCTCGTGACCGGACA
LOC_Os01g61900
Os.27209.1.S1_at--232--1291Chr01:36153987..36154011 (25 bp)
AGATCGAACAACTTGTGCTGCTACC
LOC_Os01g61900
Target Sequence 
TGAACCTCGCCTCGTAGTACGCTGTCGCCGCCGATCAGGGGAGCGAACGATCGAGCTGGAGATCTACCGGCGCGTAGGCC
GGCGTCGTTGTTGGTGGTCGGTGGGGTCCGGTGTTCGAGCACGAGCACGCACTAGCTAGCTCAGGGTGGCGGGCGCGCGC
GGGCGGGCGACCGGTGCGCAGCGTAGTGGTGCGCCAGCGCCAGTGTGCAGCGCGCGAGAGGAGGAGGTCAGGTCAGGTCA
GAGTGGCGTCGTTGACCTTCCCTTGTGTGTAGTATTATTGTAACTTTCGCCAGAAACATCATGAAAGCTGGGAAACGAAA
AAAAAGAAAAAAAGAGGGACAAAAAGAAACCTTCTCTCGTGACCGGACACNGAGAAAGATCGAACAACTTGTGCTGCTAC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis