Browse Element(s) Details


Os.5404.1.S2_at

Description gb:AK119267.1
DB_XREF= gi:37988890
TID=Os.5404.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506B12.13 (P0506B12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-A07, full insert sequence.
FL= gb:AK064796.1 gb:AK119267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6189010/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g61870OsAffx.2382.1.S1_x_at11/111+36134616..36135137hypothetical protein
LOC_Os01g61880Os.5404.3.S1_a_at11/111+36139998..36145413respiratory burst oxidase homolog, putative, expressed
LOC_Os01g61890Os.5404.4.S1_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S1_a_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.4.S1_x_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S2_at10/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61900Os.27209.1.S1_at11/111+36153984..36155621CCT motif family protein, expressed
LOC_Os01g61910Os.8181.1.S1_at11/111+36159821..36162884expressed protein
LOC_Os01g61920NANA1+36167388..36168113Histone H4, putative, expressed
LOC_Os01g61930Os.35165.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61930Os.8716.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5404.1.S2_at--222--4031NONE
CGTACTGCTCGAACTTGCAGGCGAA
NONE
Os.5404.1.S2_at--564--1891Chr01:36141831..36141855 (25 bp)
ACGTTGACGGCGAGCCACAGCGCGA
LOC_Os01g61890
Os.5404.1.S2_at--884--10671Chr01:36141792..36141816 (25 bp)
TTCCAGTTCTCGTGCACGAAGTCCA
LOC_Os01g61890
Os.5404.1.S2_at--179--4611Chr01:36141728..36141752 (25 bp)
GCGACGGGATCATCGTCCTCGCGAG
LOC_Os01g61890
Os.5404.1.S2_at--768--9491Chr01:36141638..36141662 (25 bp)
TCTCCAGCTGCCAGATCTCGATGTA
LOC_Os01g61890
Os.5404.1.S2_at--461--9272Chr08:22079221..22079244 (24 bp)
TCCTCCATGATCAGCGACGCGTACG
NONE
Os.5404.1.S2_at--294--10651Chr01:36141534..36141558 (25 bp)
TTCGCCGACGCACTCAGTATAATAA
LOC_Os01g61890
Os.5404.1.S2_at--527--9791Chr01:36141512..36141536 (25 bp)
TAACCTGCAAATCCATTCCAGCCAA
LOC_Os01g61890
Os.5404.1.S2_at--346--231Chr01:36141476..36141500 (25 bp)
ATATTTAATCCTCTCTCTCCATGTT
LOC_Os01g61890
Os.5404.1.S2_at--787--3411Chr01:36141426..36141450 (25 bp)
CAGAAGAATTCTTTCGTCCTCACCT
LOC_Os01g61890
Os.5404.1.S2_at--1140--111Chr01:36141367..36141391 (25 bp)
ATTCTTGTCGCACCTGGATGCATCA
LOC_Os01g61890
Target Sequence 
CGTACTGCTCGAACTTGCAGGCGAAGAGGCCGACGTTGACGGCGAGCCACAGCGCGACGAGCCAGATCCGCTTCCAGTTC
TCGTGCACGAAGTCCACCGTCCTGGACACGTGCCGCTTCAGCGGGCTCCGGTACCGCGACGGGATCATCGTCCTCGCGAG
GCTCGACGTCGTCCGCTTCATCTTCTCCGGCGCCGCCTGCGCGCTCACCATGCCGCGCAGCAGCGTCTCCAGCTGCCAGA
TCTCGATGTACCCGCGGTCGTCCGGGTCCAGCTCCTCCATGATCAGCGACGCGTACGTCGCCGCGTGTCCCTTCAGCTTC
GCCAGCTTGTTCGCCGACGCACTCAGTATAATAACCTGCAAATCCATTCCAGCCAAACAAGAAAACGATATTTAATCCTC
TCTCTCCATGTTCCAGAATGGCAGATGAGATCCAATCCAGAAGAATTCTTTCGTCCTCACCTCCTTGACCTCATCTTCCG
TGAGCATCCCATCGCCATTCTTGTCGCACCTGGATGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5404.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis