Browse Element(s) Details


OsAffx.2382.1.S1_x_at

Description tigr:9629.m06101
TID=OsAffx.2382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6187011/11hypothetical protein
LOC_Os09g371301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g61870OsAffx.2382.1.S1_x_at11/111+36134616..36135137hypothetical protein
LOC_Os01g61880Os.5404.3.S1_a_at11/111+36139998..36145413respiratory burst oxidase homolog, putative, expressed
LOC_Os01g61890Os.5404.4.S1_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S1_a_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.4.S1_x_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S2_at10/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61900Os.27209.1.S1_at11/111+36153984..36155621CCT motif family protein, expressed
LOC_Os01g61910Os.8181.1.S1_at11/111+36159821..36162884expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2382.1.S1_x_at--405--8291Chr01:36134663..36134687 (25 bp)
GGCATTTTCTCCCATTGGCAGCACC
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--648--10872Chr01:36134677..36134701 (25 bp)
TTGGCAGCACCTCCTTCGACGATGA
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--1061--2011Chr01:36134724..36134748 (25 bp)
ACTACCAGCAACAGAGGCGCAAGGA
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--75--9971Chr01:36134726..36134750 (25 bp)
TACCAGCAACAGAGGCGCAAGGAAT
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--38--4691Chr01:36134921..36134945 (25 bp)
GCGGAGGAGATACGGTGCGGCGATC
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--997--311Chr01:36134930..36134954 (25 bp)
ATACGGTGCGGCGATCGGCAGAGAT
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--815--9131Chr01:36134962..36134986 (25 bp)
TGCGGCGGGCAGAGATGCAGCGCGG
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--709--3991Chr01:36135057..36135081 (25 bp)
CGTGGCGGCATTGGCGCTAGCCCTA
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--1120--3911Chr01:36135062..36135086 (25 bp)
CGGCATTGGCGCTAGCCCTAGGAAG
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--741--4551Chr01:36135070..36135094 (25 bp)
GCGCTAGCCCTAGGAAGGGCTCGAA
LOC_Os01g61870
OsAffx.2382.1.S1_x_at--71--5312Chr01:36135083..36135107 (25 bp)
GAAGGGCTCGAAGAGCCGATTGACT
LOC_Os01g61870
Target Sequence 
GGCATTTTCTCCCATTGGCAGCACCTCCTTCGACGATGACGGCGGTGCTGACGACGACGGCACTACCAGCAACAGAGGCG
CAAGGAATGGAGGAGCCGGGGACGGCGGTTGTCGCGGCGCCAGGCCCGACGATCGGGGCGGAGAGGGGGACGGCTGTTGG
GGCGGCGCCGGGGACGGCTGTCGCTTTGGGGACGACGGGCGGAGATGTAGCGCGGCGGCCGGCAGAGATGCGGCGCGGCG
GCGGAGATGCGGTGGCCGGCGGAGGAGATACGGTGCGGCGATCGGCAGAGATGCGGCGCTGCGGCGGGCAGAGATGCAGC
GCGGCGGCGGGTGGAGATGCAGCGCGGCGGCCGGCGGAGATGCAGCGGCGGGCGGAGATGCGGCGCGGTGGTGGCGTGGC
GGCATTGGCGCTAGCCCTAGGAAGGGCTCGAAGAGCCGATTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2382.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis