Browse Element(s) Details


Os.27337.1.S1_a_at

Description gb:AK066968.1
DB_XREF= gi:32976986
TID=Os.27337.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091E02, full insert sequence.
FL= gb:AK066968.1 gb:AK100081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2634011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26290NANA6+15390918..15391313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26300OsAffx.27831.1.S1_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26300OsAffx.27831.1.S1_x_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26310NANA6+15398161..15398649retrotransposon protein, putative, unclassified
LOC_Os06g26320OsAffx.27832.1.S1_at11/116+15408152..15409670hypothetical protein
LOC_Os06g26330OsAffx.15626.1.S1_at11/116+15412135..15412773hypothetical protein
LOC_Os06g26330Os.37731.1.S1_at1/116+15412135..15412773hypothetical protein
LOC_Os06g26340Os.27337.1.S1_a_at11/116+15413832..15422583Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27337.1.S1_a_at--1159--5831Chr06:15414377..15414401 (25 bp)
GAGCCTTCAACTATCGTTAGACCTG
LOC_Os06g26340
Os.27337.1.S1_a_at--479--10031Chr06:15414360..15414384 (25 bp)
TAGACCTGCAGTGTCCTCGGAAAGA
LOC_Os06g26340
Os.27337.1.S1_a_at--770--8151Chr06:15414342..15414366 (25 bp)
GGAAAGAAGCTTAGCGCCTACACTT
LOC_Os06g26340
Os.27337.1.S1_a_at--344--5251Chr06:15414288..15414312 (25 bp)
GAATCATGCATTGTGTTACCAGAAC
LOC_Os06g26340
Os.27337.1.S1_a_at--917--1611Chr06:15414254..15414278 (25 bp)
AGCGGGTCACTTCTTGATGCAACAG
LOC_Os06g26340
Os.27337.1.S1_a_at--269--3591Chr06:15414216..15414240 (25 bp)
CATTCCTCGAACTACTCCATATGTA
LOC_Os06g26340
Os.27337.1.S1_a_at--107--8711Chr06:15414076..15414100 (25 bp)
TGTCTTACAGTCTTCCAGGGACGTA
LOC_Os06g26340
Os.27337.1.S1_a_at--141--5251Chr06:15414049..15414073 (25 bp)
GAATCACCTAGACCTATCAGTCGTT
LOC_Os06g26340
Os.27337.1.S1_a_at--698--1151Chr06:15414031..15414055 (25 bp)
AGTCGTTCAATCATGGAGGTCTTCC
LOC_Os06g26340
Os.27337.1.S1_a_at--1125--8772Chr06:15413928..15413952 (25 bp)
TGTTCTTTTCTTTCTGGGACTTAGA
LOC_Os06g26340
Os.27337.1.S1_a_at--225--4431Chr06:15413900..15413924 (25 bp)
GCCATTATGCTTTGCCAGTTCGGAA
LOC_Os06g26340
Target Sequence 
GAGCCTTCAACTATCGTTAGACCTGCAGTGTCCTCGGAAAGAAGCTTAGCGCCTACACTTCAATGGCAACCAAATATGAC
GCATTTTCTGAATCATGCATTGTGTTACCAGAACACAGTATTTAGCGGGTCACTTCTTGATGCAACAGGCCCAGCCCAAG
CCATTCCTCGAACTACTCCATATGTAGACTNCAGGTCCGGGAACTTGGACCTCTATCNGCATCATGTTTCTAGAGAGGAT
GTACAAAGTGACACAGCCACTGCACAAGCACACGCTGCTTCTCATGGCCCGGTTCCAGCTGTGTCTTACAGTCTTCCAGG
GACGTATAGAATCACCTAGACCTATCAGTCGTTCAATCATGGAGGTCTTCCTTTTTNCTTTTTTTTTNCACCCATCATAA
ACTGNTTGATTACCAACATGCNAATAAAAAANGGCAGAGGAACTAGATATGCATGTTCTTTTCTTTCTGGGACTTAGACA
TGCCATTATGCTTTGCCAGTTCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27337.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis