Browse Element(s) Details


OsAffx.27831.1.S1_x_at

Description tigr:9634.m02605
TID=OsAffx.27831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2630011/11hypothetical protein
LOC_Os04g165701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26260OsAffx.278.1.S1_at1/116+15373216..15377050retrotransposon protein, putative, unclassified
LOC_Os06g26270Os.51757.1.S1_at11/116+15378506..15383234expressed protein
LOC_Os06g26280OsAffx.27830.1.S1_at11/116+15387453..15388457hypothetical protein
LOC_Os06g26290NANA6+15390918..15391313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26300OsAffx.27831.1.S1_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26300OsAffx.27831.1.S1_x_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26310NANA6+15398161..15398649retrotransposon protein, putative, unclassified
LOC_Os06g26320OsAffx.27832.1.S1_at11/116+15408152..15409670hypothetical protein
LOC_Os06g26330OsAffx.15626.1.S1_at11/116+15412135..15412773hypothetical protein
LOC_Os06g26330Os.37731.1.S1_at1/116+15412135..15412773hypothetical protein
LOC_Os06g26340Os.27337.1.S1_a_at11/116+15413832..15422583Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27831.1.S1_x_at--118--451Chr06:15396816..15396840 (25 bp)
ATCTCAATCTGGTAAAGGTGCTGAA
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--751--9112Chr06:15396823..15396847 (25 bp)
TCTGGTAAAGGTGCTGAAGATGGCT
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--887--7351Chr06:15396851..15396875 (25 bp)
GTGACAAAAGTGATGGGCTTCAAGA
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--176--2331Chr06:15396857..15396881 (25 bp)
AAAGTGATGGGCTTCAAGATGGTGC
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--335--791Chr06:15396863..15396887 (25 bp)
ATGGGCTTCAAGATGGTGCGGTTGA
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--856--8991Chr06:15396885..15396909 (25 bp)
TGAAGATCTTGGTGCAGATGGTAAT
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--587--9191Chr06:15396975..15396999 (25 bp)
TGCCTTGATCAACCAGTCCGGAGTG
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--799--7251Chr06:15396990..15397014 (25 bp)
GTCCGGAGTGCTCGTCAATACATTA
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--911--4231Chr06:15396992..15397016 (25 bp)
CCGGAGTGCTCGTCAATACATTAAA
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--310--8031Chr06:15396994..15397018 (25 bp)
GGAGTGCTCGTCAATACATTAAAAA
LOC_Os06g26300
OsAffx.27831.1.S1_x_at--139--7291Chr06:15396997..15397021 (25 bp)
GTGCTCGTCAATACATTAAAAAATA
LOC_Os06g26300
Target Sequence 
ATCTCAATCTGGTAAAGGTGCTGAAGATGGCTCAGGTGACAAAAGTGATGGGCTTCAAGATGGTGCGGTTGAAGATCTTG
GTGCAGATGGTAATGAAGTACAGGAAGAACCTCCTAGGCGCATGAATTTCCAAGACCAAGTTGATTATGCCATGCAACAT
GCCTTGATCAACCAGTCCGGAGTGCTCGTCAATACATTAAAAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27831.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis