Browse Element(s) Details


OsAffx.27830.1.S1_at

Description tigr:9634.m02603
TID=OsAffx.27830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2628011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26234OsAffx.15623.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.27031.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.28472.1.A1_x_at10/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.13933.1.S1_x_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.57509.1.A1_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26260OsAffx.278.1.S1_at1/116+15373216..15377050retrotransposon protein, putative, unclassified
LOC_Os06g26270Os.51757.1.S1_at11/116+15378506..15383234expressed protein
LOC_Os06g26280OsAffx.27830.1.S1_at11/116+15387453..15388457hypothetical protein
LOC_Os06g26290NANA6+15390918..15391313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26300OsAffx.27831.1.S1_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26300OsAffx.27831.1.S1_x_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26310NANA6+15398161..15398649retrotransposon protein, putative, unclassified
LOC_Os06g26320OsAffx.27832.1.S1_at11/116+15408152..15409670hypothetical protein
LOC_Os06g26330OsAffx.15626.1.S1_at11/116+15412135..15412773hypothetical protein
LOC_Os06g26330Os.37731.1.S1_at1/116+15412135..15412773hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27830.1.S1_at--633--2911Chr06:15388398..15388422 (25 bp)
AAGGCGGTCGGAGGCGGTAGGCATT
LOC_Os06g26280
OsAffx.27830.1.S1_at--819--10071Chr06:15388381..15388405 (25 bp)
TAGGCATTGATGTAGCTCGGGTCGG
LOC_Os06g26280
OsAffx.27830.1.S1_at--776--8332Chr09:3471023..3471042 (20 bp)
GGCGGTGGGATTTCAGCGACGGTTA
NONE
OsAffx.27830.1.S1_at--752--7873Chr12:4810651..4810673 (23 bp)
GGTTCTCGGGAATCCCTAGAAGACT
NONE
OsAffx.27830.1.S1_at--790--8171Chr06:15387611..15387635 (25 bp)
GGAATCCCTAGAAGACTTACCGCGC
LOC_Os06g26280
OsAffx.27830.1.S1_at--404--3692Chr06:15387604..15387628 (25 bp)
CTAGAAGACTTACCGCGCTTACCAT
LOC_Os06g26280
OsAffx.27830.1.S1_at--527--5691Chr06:15387598..15387622 (25 bp)
GACTTACCGCGCTTACCATAAGCAA
LOC_Os06g26280
OsAffx.27830.1.S1_at--168--9972Chr10:9608183..9608203 (21 bp)
TACCATAAGCAAGAATGGGCACAAT
NONE
OsAffx.27830.1.S1_at--1008--7591Chr06:15387569..15387593 (25 bp)
GGGCACAATAACATGCCATTGGGTT
LOC_Os06g26280
OsAffx.27830.1.S1_at--604--4311Chr06:15387554..15387578 (25 bp)
CCATTGGGTTGTGCCTTGTGTGTAC
LOC_Os06g26280
OsAffx.27830.1.S1_at--270--10851Chr06:15387551..15387575 (25 bp)
TTGGGTTGTGCCTTGTGTGTACAGT
LOC_Os06g26280
Target Sequence 
AAGGCGGTCGGAGGCGGTAGGCATTGATGTAGCTCGGGTCGGCGGTGGCGGTGGGATTTCAGCGACGGTTAGGGGAAGAA
AGGTGAGGGCCGGGGTGCGGTGTGGAGCGGTGACGCCAGTGGTGGCGATGGCGAGAGCGGTGGCTAGAGGCGGCCGGAGC
TTGCCGGCGACGGCGGAGAGAGGGAGCGATGCGGGGAAATGGTTTCTATGTGCGGGGAGCACGGGGAAAGGGGAAAAAGG
GATGAGGGAAGTTGAACCCATGGCAATTAAGGACCGGTTCTCGGGAATCCCTAGAAGACTTACCGCGCTTACCATAAGCA
AGAATGGGCACAATAACATGCCATTGGGTTGTGCCTTGTGTGTACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis