Browse Element(s) Details


Os.51757.1.S1_at

Description gb:AK063619.1
DB_XREF= gi:32973637
TID=Os.51757.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E03, full insert sequence.
FL= gb:AK063619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2627011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26234OsAffx.15623.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.27031.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.28472.1.A1_x_at10/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.13933.1.S1_x_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.57509.1.A1_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26260OsAffx.278.1.S1_at1/116+15373216..15377050retrotransposon protein, putative, unclassified
LOC_Os06g26270Os.51757.1.S1_at11/116+15378506..15383234expressed protein
LOC_Os06g26280OsAffx.27830.1.S1_at11/116+15387453..15388457hypothetical protein
LOC_Os06g26290NANA6+15390918..15391313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26300OsAffx.27831.1.S1_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26300OsAffx.27831.1.S1_x_at11/116+15396703..15397092hypothetical protein
LOC_Os06g26310NANA6+15398161..15398649retrotransposon protein, putative, unclassified
LOC_Os06g26320OsAffx.27832.1.S1_at11/116+15408152..15409670hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51757.1.S1_at--685--9831Chr06:15379024..15379048 (25 bp)
TAAAGCCCTAGCTGCCCAAAAGCAA
LOC_Os06g26270
Os.51757.1.S1_at--147--3091Chr06:15378957..15378981 (25 bp)
AATAAGCATCTCCATGACCAACTGG
LOC_Os06g26270
Os.51757.1.S1_at--812--5851Chr06:15378942..15378966 (25 bp)
GACCAACTGGAGTCAGCAGACCTCA
LOC_Os06g26270
Os.51757.1.S1_at--431--9691Chr06:15378920..15378944 (25 bp)
TCACGGTGTCACGTTCTGATGGCAA
LOC_Os06g26270
Os.51757.1.S1_at--577--6291Chr06:15378833..15378857 (25 bp)
GATGATATTCTAGCTTACGCCATTG
LOC_Os06g26270
Os.51757.1.S1_at--529--51Chr06:15378812..15378836 (25 bp)
ATTGAATGGTCCACACTCCACAATG
LOC_Os06g26270
Os.51757.1.S1_at--550--2211Chr06:15378719..15378743 (25 bp)
ACAAGTAGTCCCATCTTTAGTTGAA
LOC_Os06g26270
Os.51757.1.S1_at--1025--1231Chr06:15378701..15378725 (25 bp)
AGTTGAATGTTCTGCTATGAGCCTA
LOC_Os06g26270
Os.51757.1.S1_at--389--4451Chr06:15378681..15378705 (25 bp)
GCCTATGACATACCAGATCCTCGAA
LOC_Os06g26270
Os.51757.1.S1_at--79--5431Chr06:15378648..15378672 (25 bp)
GAACCTCTTACGAAGGTACCCATAG
LOC_Os06g26270
Os.51757.1.S1_at--108--5531Chr06:15378587..15378611 (25 bp)
GAAAACGTACATGTCCCTGTGTAGA
LOC_Os06g26270
Target Sequence 
TAAAGCCCTAGCTGCCCAAAAGCAATCTGAAGGTCTAATGATTGAATATAACCACCTAGTGGAGGACAATAAGCATCTCC
ATGACCAACTGGAGTCAGCAGACCTCACGGTGTCACGTTCTGATGGCAAGAAGAATACTTAAGGATGACATGATCTCAAG
GTAAACCTACTCCATAGCAAGGAGTCCAGTTGATGATATTCTAGCTTACGCCATTGAATGGTCCACACTCCACAATGCAG
AAGCTTCTGGACGTCTGAAGTCAGCTGATGTTTGATGGACAAGTTGGTAACTGATAAATTCTCATACAAGTAGTCCCATC
TTTAGTTGAATGTTCTGCTATGAGCCTATGACATACCAGATCCTCGAATAACCACCGAACCTCTTACGAAGGTACCCATA
GATTGATAGATGTCCATCTGTAAAGATCTCCAAAAAGGAAAACGTACATGTCCCTGTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis