Browse Element(s) Details


Os.27342.1.S2_at

Description gb:AK106566.1
DB_XREF= gi:32991775
TID=Os.27342.1
CNT=64
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D12, full insert sequence.
FL= gb:AK106566.1 gb:AK064535.1 gb:AK061828.1 gb:AK098944.1 gb:AK099023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3643011/11expressed protein
LOC_Os04g454103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g067101/11hypothetical protein
LOC_Os03g156001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36370Os.40855.2.S1_x_at7/1112+22234810..22235982hypothetical protein
LOC_Os12g36370Os.40360.1.S1_x_at1/1112+22234810..22235982hypothetical protein
LOC_Os12g36380NANA12+22236585..22239727hypothetical protein
LOC_Os12g36390OsAffx.26555.1.S1_at3/1112+22244090..22247878retrotransposon protein, putative, unclassified
LOC_Os12g36400NANA12+22250455..22251327transposon protein, putative, Pong sub-class, expressed
LOC_Os12g36410NANA12+22252091..22253431transposon protein, putative, Pong sub-class
LOC_Os12g36420OsAffx.32055.1.S1_at11/1112+22254353..22257308hypothetical protein
LOC_Os12g36430Os.27342.1.S1_a_at11/1112+22257689..22261258expressed protein
LOC_Os12g36430Os.27342.1.S2_at11/1112+22257689..22261258expressed protein
LOC_Os12g36430Os.54282.1.S1_x_at2/1112+22257689..22261258expressed protein
LOC_Os12g36440OsAffx.19986.1.S1_at11/1112+22263065..22268432hypothetical protein
LOC_Os12g36450OsAffx.19987.1.S1_at11/1112+22271645..22272171hypothetical protein
LOC_Os12g36470NANA12+22282010..22285314transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27342.1.S2_at--1036--731Chr12:22258186..22258210 (25 bp)
ATGTATATTCGGCTGTCGCGTACAC
LOC_Os12g36430
Os.27342.1.S2_at--796--8711Chr12:22258173..22258197 (25 bp)
TGTCGCGTACACCAACTGATGTCAT
LOC_Os12g36430
Os.27342.1.S2_at--577--2551Chr12:22258160..22258184 (25 bp)
AACTGATGTCATCAACTCTTCTTCC
LOC_Os12g36430
Os.27342.1.S2_at--591--9672Chr08:12681617..12681725 (25 bp)
TCAACTCTTCTTCCCTTTAATACTA
NONE
Os.27342.1.S2_at--724--9751Chr12:22258132..22258156 (25 bp)
TAATACTATCCCGATGTCGCTGCTG
LOC_Os12g36430
Os.27342.1.S2_at--636--771Chr12:22258119..22258143 (25 bp)
ATGTCGCTGCTGTGACTTCTCTACC
LOC_Os12g36430
Os.27342.1.S2_at--207--2712Chr07:6617183..6617207 (25 bp)
AAGCTACGCGAGTTCCATGCATGCT
NONE
Os.27342.1.S2_at--670--5413Chr12:22258000..22258024 (25 bp)
GAAGCCGACGCTAAGGCTACGTCAC
LOC_Os12g36430
Os.27342.1.S2_at--645--3556Chr06:3270604..3270626 (23 bp)
CATCACCATCACAACCATGCATGTT
NONE
Os.27342.1.S2_at--925--2993Chr12:22257878..22257902 (25 bp)
AATGAGACGACCACTAGCAGCTTAA
LOC_Os12g36430
Os.27342.1.S2_at--321--3651Chr12:22257805..22257829 (25 bp)
CTTCTCGAGGCCCTGGGAATCAGAA
LOC_Os12g36430
Target Sequence 
ATGTATATTCGGCTGTCGCGTACACCAACTGATGTCATCAACTCTTCTTCCCTTTAATACTATCCCGATGTCGCTGCTGT
GACTTCTCTACCGTCCAAGCTACGCGAGTTCCATGCATGCTGAAGATCAATCTATCTACACCACCACGTCGCTCAAGACT
GATGAGGCGGAGCGACGAGGGCGGGCGAAGCCGACGCTAAGGCTACGTCACCAACACCGGCGCACGGACCGACGAGGCCG
TGGATCGCTGCCGGCACCCACATTTACATCACCATCACAACCATGCATGTTGAATGCGAAGCAAAGACAATGAGACGACC
ACTAGCAGCTTAATCGGAGGTTCTCTGCAGGCCTAAACCTGCAGAGGTAATTAACCAGGAGCTTCTCGAGGCCCTGGGAA
TCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27342.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis