Browse Element(s) Details


OsAffx.19987.1.S1_at

Description tigr:9640.m03530
TID=OsAffx.19987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3645011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36390OsAffx.26555.1.S1_at3/1112+22244090..22247878retrotransposon protein, putative, unclassified
LOC_Os12g36400NANA12+22250455..22251327transposon protein, putative, Pong sub-class, expressed
LOC_Os12g36410NANA12+22252091..22253431transposon protein, putative, Pong sub-class
LOC_Os12g36420OsAffx.32055.1.S1_at11/1112+22254353..22257308hypothetical protein
LOC_Os12g36430Os.27342.1.S1_a_at11/1112+22257689..22261258expressed protein
LOC_Os12g36430Os.27342.1.S2_at11/1112+22257689..22261258expressed protein
LOC_Os12g36430Os.54282.1.S1_x_at2/1112+22257689..22261258expressed protein
LOC_Os12g36440OsAffx.19986.1.S1_at11/1112+22263065..22268432hypothetical protein
LOC_Os12g36450OsAffx.19987.1.S1_at11/1112+22271645..22272171hypothetical protein
LOC_Os12g36470NANA12+22282010..22285314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36480Os.14491.2.S1_x_at1/1112+22287045..22291790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36490Os.8771.1.S1_x_at11/1112+22294676..22301268expressed protein
LOC_Os12g36490Os.8771.1.S2_x_at11/1112+22294676..22301268expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19987.1.S1_at--234--9531Chr12:22271675..22271699 (25 bp)
TCTCATCAGCCAAAGAGTGGGCAGT
LOC_Os12g36450
OsAffx.19987.1.S1_at--491--8531Chr12:22271703..22271727 (25 bp)
TGGACATGGATCTACTGGCAGCTTT
LOC_Os12g36450
OsAffx.19987.1.S1_at--856--9911Chr12:22271715..22271739 (25 bp)
TACTGGCAGCTTTGTTTTCCCTTAC
LOC_Os12g36450
OsAffx.19987.1.S1_at--149--6631Chr12:22271728..22271752 (25 bp)
GTTTTCCCTTACTGCAACGATATTT
LOC_Os12g36450
OsAffx.19987.1.S1_at--251--2571Chr12:22271781..22271805 (25 bp)
AACTGGTTGATGCTATTGCCCCTGT
LOC_Os12g36450
OsAffx.19987.1.S1_at--888--71Chr12:22271795..22271819 (25 bp)
ATTGCCCCTGTAGATGCTGCCTTTA
LOC_Os12g36450
OsAffx.19987.1.S1_at--186--611Chr12:22271808..22271832 (25 bp)
ATGCTGCCTTTACCTTTGCTGGGAA
LOC_Os12g36450
OsAffx.19987.1.S1_at--455--1751Chr12:22271819..22271843 (25 bp)
ACCTTTGCTGGGAAGCTCATTGAGA
LOC_Os12g36450
OsAffx.19987.1.S1_at--884--5951Chr12:22271896..22271920 (25 bp)
GAGAATTTTGAAGCCTACCACTAAG
LOC_Os12g36450
OsAffx.19987.1.S1_at--417--7751Chr12:22272043..22272067 (25 bp)
GGTGTCATGAGCTACCATGGAGCAA
LOC_Os12g36450
OsAffx.19987.1.S1_at--154--5131Chr12:22272064..22272088 (25 bp)
GCAAAGCAACCGTTCAAGACTCGTG
LOC_Os12g36450
Target Sequence 
TCTCATCAGCCAAAGAGTGGGCAGTATATGGACATGGATCTACTGGCAGCTTTGTTTTCCCTTACTGCAACGATATTTGA
GGTCAGTCAAGTTCAAGATTTGGTCCAACTGGTTGATGCTATTGCCCCTGTAGATGCTGCCTTTACCTTTGCTGGGAAGC
TCATTGAGATGGTAAAAAGGAAGATCATAGAAAGAATCGATTTTCTTGTGGATGAATGGTCGAGAATTTTGAAGCCTACC
ACTAAGATGGTCATATCAATGGGTGTCATGAGCTACCATGGAGCAAAGCAACCGTTCAAGACTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis