Browse Element(s) Details


Os.8771.1.S1_x_at

Description gb:AK106238.1
DB_XREF= gi:32991447
TID=Os.8771.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C08, full insert sequence.
FL= gb:AK063993.1 gb:AK106238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3649011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36450OsAffx.19987.1.S1_at11/1112+22271645..22272171hypothetical protein
LOC_Os12g36470NANA12+22282010..22285314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36480Os.14491.2.S1_x_at1/1112+22287045..22291790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36490Os.8771.1.S1_x_at11/1112+22294676..22301268expressed protein
LOC_Os12g36490Os.8771.1.S2_x_at11/1112+22294676..22301268expressed protein
LOC_Os12g36500OsAffx.7810.1.S1_at11/1112+22304569..22305492hypothetical protein
LOC_Os12g36510NANA12+22316510..22319753retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36520OsAffx.7102.1.S1_at1/1112+22325584..22332148transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8771.1.S1_x_at--465--1451Chr12:22296030..22296054 (25 bp)
AGAAGCTCCACATGCAGGCCATTAA
LOC_Os12g36490
Os.8771.1.S1_x_at--1109--9811Chr12:22296008..22296032 (25 bp)
TAACATCTTCACACAGCAACAGCAT
LOC_Os12g36490
Os.8771.1.S1_x_at--704--10091Chr12:22295981..22296005 (25 bp)
TATGGAAGCACTTTCGACGACGTCT
LOC_Os12g36490
Os.8771.1.S1_x_at--812--911Chr12:22295920..22295944 (25 bp)
AGGCTGCTCGTAGACATCTTCTTGA
LOC_Os12g36490
Os.8771.1.S1_x_at--510--8491Chr12:22295853..22295877 (25 bp)
TGGCAATACTGCTGTCCGACCAAAA
LOC_Os12g36490
Os.8771.1.S1_x_at--474--9211Chr12:22295813..22295837 (25 bp)
TGCCAATGCCACCATTATCTTCAAG
LOC_Os12g36490
Os.8771.1.S1_x_at--626--931Chr12:22295790..22295814 (25 bp)
AGGCAAGTGACACCGTTGTCCGTGA
LOC_Os12g36490
Os.8771.1.S1_x_at--269--7251Chr12:22295773..22295797 (25 bp)
GTCCGTGATCTCAAGACAGTGCTTT
LOC_Os12g36490
Os.8771.1.S1_x_at--865--5591Chr12:22295710..22295734 (25 bp)
GAAATACTCGAGCATCTACACAGGA
LOC_Os12g36490
Os.8771.1.S1_x_at--1121--931Chr12:22295682..22295706 (25 bp)
AGGAAGCCTCCTATCTCAAGAAACT
LOC_Os12g36490
Os.8771.1.S1_x_at--730--1811Chr12:22295489..22295513 (25 bp)
ACGAAATATTTATCTCTCTCTCTCC
LOC_Os12g36490
Target Sequence 
AGAAGCTCCACATGCAGGCCATTAACATCTTCACACAGCAACAGCATCCTATGGAAGCACTTTCGACGACGTCTTCGAAT
ATAGACACAACANATAGCGAAACGAACATCAGGCTGCTCGTAGACATCTTCTTGACTAACAAGGACGCCTCCACAAGAAA
AATGGCAGTTGGCATACTGGCAATACTGCTGTCCGACCAAAATAAAAGCAATGCCAATGCCAATGCCACCATTATCTTCA
AGGCAAGTGACACCGTTGTCCGTGATCTCAAGACAGTGCTTTTAGATGATGAGGAAACAGAATACAGAATATGCGCAGCA
GAAATACTCGAGCATCTACACAGGACAAAGGAAGCCTCCTATCTCAAGAAACTGATGGAAGCCATGCAAAATGTGCTACC
GAAGATTCTCAACGAAATATTTATCTCTCTCTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8771.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis