Browse Element(s) Details


Os.8771.1.S2_x_at

Description gb:AK063993.1
DB_XREF= gi:32974011
TID=Os.8771.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E09, full insert sequence.
FL= gb:AK063993.1 gb:AK106238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3649011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36450OsAffx.19987.1.S1_at11/1112+22271645..22272171hypothetical protein
LOC_Os12g36470NANA12+22282010..22285314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36480Os.14491.2.S1_x_at1/1112+22287045..22291790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g36490Os.8771.1.S1_x_at11/1112+22294676..22301268expressed protein
LOC_Os12g36490Os.8771.1.S2_x_at11/1112+22294676..22301268expressed protein
LOC_Os12g36500OsAffx.7810.1.S1_at11/1112+22304569..22305492hypothetical protein
LOC_Os12g36510NANA12+22316510..22319753retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36520OsAffx.7102.1.S1_at1/1112+22325584..22332148transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8771.1.S2_x_at--629--9791Chr12:22295224..22295248 (25 bp)
TACACTTGCTGGTGAAATTGCCCGA
LOC_Os12g36490
Os.8771.1.S2_x_at--128--2251Chr12:22295210..22295234 (25 bp)
AAATTGCCCGAGGAGACTCTGCATC
LOC_Os12g36490
Os.8771.1.S2_x_at--1010--3771Chr12:22295194..22295218 (25 bp)
CTCTGCATCCAGCTTTGTCGGTAAG
LOC_Os12g36490
Os.8771.1.S2_x_at--97--9011Chr12:22295074..22295098 (25 bp)
TGAAGGATGCTACCCCAAACAAGAG
LOC_Os12g36490
Os.8771.1.S2_x_at--1145--6291Chr12:22294987..22295011 (25 bp)
GATGATGTTATCTAGCAGCGACCAT
LOC_Os12g36490
Os.8771.1.S2_x_at--963--2331Chr12:22294946..22294970 (25 bp)
AAAGCTTCGGTTCTCTCGTGAAAGA
LOC_Os12g36490
Os.8771.1.S2_x_at--1039--2971Chr12:22294887..22294911 (25 bp)
AATGTGGCAACTACACCAGCTAGCA
LOC_Os12g36490
Os.8771.1.S2_x_at--271--4631Chr12:22294792..22294816 (25 bp)
GCGTTCCCAGAAAATTGTTTGTCAT
LOC_Os12g36490
Os.8771.1.S2_x_at--1064--9811Chr12:22294750..22294774 (25 bp)
TAAACTCCTTATTCTGTAGCATGTG
LOC_Os12g36490
Os.8771.1.S2_x_at--791--3051Chr12:22294719..22294743 (25 bp)
AATCTAGCTATTTGTCCCATCTACT
LOC_Os12g36490
Os.8771.1.S2_x_at--861--7031Chr12:22294680..22294704 (25 bp)
GTAAAAACTCACTATGAAACGGTTG
LOC_Os12g36490
Target Sequence 
TACACTTGCTGGTGAAATTGCCCGAGGAGACTCTGCATCCAGCTTTGTCGGTAAGCTGAGGACGATGGTAGATCAAAACA
GTGAACAAACAGTCAATTGCCTGAGAATTCTGAAGATTGCCACTAGGATGATCATATCACTGCTAAAACTTGAAGGATGC
TACCCCAAACAAGAGCTGGAGAACTTGATGGTATCTCTGNCCAAAGCTTCCGAACAAATNTTTGAACTGGAAGCGTTGAT
GATGTTATCTAGCAGCGACCATNCCGGAAAGAAGACTGAAAGCTTCGGTTCTCTCGTGAAAGAAGCAGAAGGCCTTATGA
AGAATAAGAAGGAAAAAAATGTGGCAACTACACCAGCTAGCACTATGAATGGAAACCAGTAGATTGAGTAGATTATCAAC
TAATCTGCTGATATTCACAATAAAGAACTTTGGCGTTCCCAGAAAATTGTTTGTCATAAAGATATTCTGTAGGATAAACT
CCTTATTCTGTAGCATGTGTGCTGAAATCTAGCTATTTGTCCCATCTACTTATCAAACATTCAAGTAAAAACTCACTATG
AAACGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8771.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis