Browse Element(s) Details


OsAffx.32055.1.S1_at

Description tigr:9640.m03528
TID=OsAffx.32055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3642011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36360Os.46610.1.S1_x_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360OsAffx.22143.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360Os.11220.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360Os.53292.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36370Os.40855.2.S1_x_at7/1112+22234810..22235982hypothetical protein
LOC_Os12g36370Os.40360.1.S1_x_at1/1112+22234810..22235982hypothetical protein
LOC_Os12g36380NANA12+22236585..22239727hypothetical protein
LOC_Os12g36390OsAffx.26555.1.S1_at3/1112+22244090..22247878retrotransposon protein, putative, unclassified
LOC_Os12g36400NANA12+22250455..22251327transposon protein, putative, Pong sub-class, expressed
LOC_Os12g36410NANA12+22252091..22253431transposon protein, putative, Pong sub-class
LOC_Os12g36420OsAffx.32055.1.S1_at11/1112+22254353..22257308hypothetical protein
LOC_Os12g36430Os.27342.1.S1_a_at11/1112+22257689..22261258expressed protein
LOC_Os12g36430Os.27342.1.S2_at11/1112+22257689..22261258expressed protein
LOC_Os12g36430Os.54282.1.S1_x_at2/1112+22257689..22261258expressed protein
LOC_Os12g36440OsAffx.19986.1.S1_at11/1112+22263065..22268432hypothetical protein
LOC_Os12g36450OsAffx.19987.1.S1_at11/1112+22271645..22272171hypothetical protein
LOC_Os12g36470NANA12+22282010..22285314transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32055.1.S1_at--1085--5271Chr12:22256667..22256691 (25 bp)
GAATGTGCCCAGAACCTCAAAGAAC
LOC_Os12g36420
OsAffx.32055.1.S1_at--205--7291Chr12:22256799..22256823 (25 bp)
GTGCTTGCAAAACCGCGTGACGAAT
LOC_Os12g36420
OsAffx.32055.1.S1_at--225--351Chr12:22256886..22256910 (25 bp)
ATGAATGCCCGAGATTTACCTCCTC
LOC_Os12g36420
OsAffx.32055.1.S1_at--978--10451Chr12:22256901..22256925 (25 bp)
TTACCTCCTCTGTTCGATGCTATTA
LOC_Os12g36420
OsAffx.32055.1.S1_at--177--3651Chr12:22256920..22256944 (25 bp)
CTATTACCAGTGAAGCCGGCGGCTT
LOC_Os12g36420
OsAffx.32055.1.S1_at--161--3931Chr12:22256936..22256960 (25 bp)
CGGCGGCTTCAGCATTCTAGGTAAG
LOC_Os12g36420
OsAffx.32055.1.S1_at--874--7811Chr12:22256955..22256979 (25 bp)
GGTAAGGTCCAGCTCCAGAAGATGA
LOC_Os12g36420
OsAffx.32055.1.S1_at--348--2491Chr12:22257020..22257044 (25 bp)
AACAGTGAAGCTTGTCGCGGATTTA
LOC_Os12g36420
OsAffx.32055.1.S1_at--381--8831Chr12:22257100..22257124 (25 bp)
TGATTGAATCACTGTCCGAGGTTGC
LOC_Os12g36420
OsAffx.32055.1.S1_at--1010--2511Chr12:22257147..22257171 (25 bp)
AACTTCATGGTTATCGCTGGCGGTA
LOC_Os12g36420
OsAffx.32055.1.S1_at--268--2771Chr12:22257180..22257204 (25 bp)
AAGACCCTTGATTCTTTCGTGAAAG
LOC_Os12g36420
Target Sequence 
GAATGTGCCCAGAACCTCAAAGAACGTATAAAGTTTGGGATGCTAAAGGTGCTTGCAAAACCGCGTGACGAATATGTGAA
TAGAGAAACTCTCACAGCAGTTTTATCTCTAAGTGTGACGATATCACGCAACTTAATGAATGCCCGAGATTTACCTCCTC
TGTTCGATGCTATTACCAGTGAAGCCGGCGGCTTCAGCATTCTAGGTAAGGTCCAGCTCCAGAAGATGATCGAGAGATCA
AGTTGTTTAAATACGGCCAACGAACTGAAAACAGTGAAGCTTGTCGCGGATTTATTAATACTAACTGTTAAACATGGAAG
CCGCGACGCCATACGGGACGCAAAGGAATTGATTGAATCACTGTCCGAGGTTGCGAAAGAAATATCGGATACTGAGAACT
TCATGGTTATCGCTGGCGGTAGCGACCCAAAGACCCTTGATTCTTTCGTGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis