Browse Element(s) Details


Os.27402.1.S1_at

Description gb:AK065510.1
DB_XREF= gi:32975528
TID=Os.27402.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030L03, full insert sequence.
FL= gb:AK099773.1 gb:AK065510.1 gb:AK072577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0318011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03140OsAffx.25849.1.S1_at11/114+1293423..1293926hypothetical protein
LOC_Os04g03150NANA4+1301772..1305052retrotransposon protein, putative, unclassified
LOC_Os04g03180Os.27402.1.S1_at11/114+1316762..1323620Leucine Rich Repeat family protein, expressed
LOC_Os04g03190Os.8747.3.S1_x_at1/114+1330680..1336174retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03200OsAffx.9826.1.S1_at1/114+1339232..1344203hypothetical protein
LOC_Os04g03210OsAffx.3709.1.S1_at11/114+1345753..1349313Leucine Rich Repeat family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27402.1.S1_at--787--6531Chr04:1317312..1317336 (25 bp)
GATTTAAAGCCACTTGTGCCCTCAA
LOC_Os04g03180
Os.27402.1.S1_at--774--7291Chr04:1317297..1317321 (25 bp)
GTGCCCTCAACTACAATATCAATCA
LOC_Os04g03180
Os.27402.1.S1_at--985--10271Chr04:1317269..1317293 (25 bp)
TTTGCTCTGTTTCTATTCCAATACA
LOC_Os04g03180
Os.27402.1.S1_at--131--9851Chr04:1317248..1317272 (25 bp)
TACAGTATTCCGCATTAAACAGATT
LOC_Os04g03180
Os.27402.1.S1_at--157--4871Chr04:1317179..1317203 (25 bp)
GCTAGTAACTCCTTATTCACTCAAC
LOC_Os04g03180
Os.27402.1.S1_at--480--9811Chr04:1317073..1317097 (25 bp)
TAAAAGTTTTGGTATCTCCTGCTAC
LOC_Os04g03180
Os.27402.1.S1_at--136--10171Chr04:1317061..1317085 (25 bp)
TATCTCCTGCTACCTGTCAAATTAG
LOC_Os04g03180
Os.27402.1.S1_at--618--10211Chr04:1316984..1317008 (25 bp)
TATTATGTCGGTGCCATGCTACTAT
LOC_Os04g03180
Os.27402.1.S1_at--1161--2512Chr04:1316940..1316964 (25 bp)
AACTTTGACCATATATACCCATTCG
LOC_Os04g03180
Os.27402.1.S1_at--726--7371Chr04:1316908..1316932 (25 bp)
GTGACGATTAGTATTGTCTCATATC
LOC_Os04g03180
Os.27402.1.S1_at--258--7431Chr04:1316806..1316830 (25 bp)
GTGTTCATCTATTCCAATAGCATTG
LOC_Os04g03180
Target Sequence 
GATTTAAAGCCACTTGTGCCCTCAACTACAATATCAATCAATTTTTGCTCTGTTTCTATTCCAATACAGTATTCCGCATT
AAACAGATTTTTGTAAGAGGAGTTGAATTTACAGAATTCCTTTTGATGGAAAAGCTAGTAACTCCTTATTCACTCAACAT
TGGAAACTGGTTGTTTTGAAGTCCAAAAACTGCTGACAAANTTTTACGGTACTGGAGAGGTACCAAAGGTACCAAAATTT
AAAAGTTTTGGTATCTCCTGCTACCTGTCAAATTAGCATATAAATTGAATAACAGACTGAAAAGACAAAAAGAAGATGAG
AACACTGTTATTATGTCGGTGCCATGCTACTATCNTCAAAGATAAGTCAAACAACTTTGACCATATATACCCATTCGATG
AATAGTGACGATTAGTATTGTCTCATATCTAGAAACTAGATGATACCCTGCNCGTTGCTTGTGGAATGGGGAAGAAGAAA
AAGGTTTTCTCTCATAATTATCTAATGTGTTCATCTATTCCAATAGCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis