Browse Element(s) Details


OsAffx.25849.1.S1_at

Description tigr:9632.m00221
TID=OsAffx.25849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0314011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03100Os.26445.2.S1_at4/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100Os.26445.1.A1_at3/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100OsAffx.18867.1.S1_at1/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03110NANA4+1277545..1281879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03120NANA4+1282719..1287616retrotransposon protein, putative, unclassified
LOC_Os04g03130OsAffx.13636.1.S1_at11/114+1289041..1291113hypothetical protein
LOC_Os04g03140OsAffx.25849.1.S1_at11/114+1293423..1293926hypothetical protein
LOC_Os04g03150NANA4+1301772..1305052retrotransposon protein, putative, unclassified
LOC_Os04g03180Os.27402.1.S1_at11/114+1316762..1323620Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25849.1.S1_at--848--9771Chr04:1293695..1293717 (23 bp)
TAAGAGAGAGGGTGTCGCTGGAGTA
LOC_Os04g03140
OsAffx.25849.1.S1_at--181--4611Chr04:1293644..1293668 (25 bp)
GCGACGTGCGCAGAGGCCGAGCCGA
LOC_Os04g03140
OsAffx.25849.1.S1_at--329--4091Chr04:1293622..1293646 (25 bp)
CGACGACGGAGGCAAAAGTGGCGCT
LOC_Os04g03140
OsAffx.25849.1.S1_at--203--5151Chr04:1293580..1293635 (25 bp)
GCAAAAGTGGCGCTGGACTCGACTC
LOC_Os04g03140
OsAffx.25849.1.S1_at--1062--2411Chr04:1293578..1293633 (25 bp)
AAAAGTGGCGCTGGACTCGACTCGG
LOC_Os04g03140
OsAffx.25849.1.S1_at--179--2311Chr04:1293577..1293632 (25 bp)
AAAGTGGCGCTGGACTCGACTCGGA
LOC_Os04g03140
OsAffx.25849.1.S1_at--325--7671Chr04:1293529..1293553 (25 bp)
GGGTTGAGCACAAGTTCGGCTTGAA
LOC_Os04g03140
OsAffx.25849.1.S1_at--730--6651Chr04:1293527..1293551 (25 bp)
GTTGAGCACAAGTTCGGCTTGAATA
LOC_Os04g03140
OsAffx.25849.1.S1_at--249--8911Chr04:1293525..1293549 (25 bp)
TGAGCACAAGTTCGGCTTGAATACA
LOC_Os04g03140
OsAffx.25849.1.S1_at--162--3311Chr04:1293521..1293545 (25 bp)
CACAAGTTCGGCTTGAATACACACA
LOC_Os04g03140
OsAffx.25849.1.S1_at--332--2831Chr04:1293518..1293542 (25 bp)
AAGTTCGGCTTGAATACACACAACA
LOC_Os04g03140
Target Sequence 
TAAGAGAGAGGGTGTCGCTGGAGTACGTGAAGCTTGGAGGTCAGGGTCGCGGCGACGTGCGCAGAGGCCGAGCCGACGAC
GGAGGCAAAAGTGGCGCTGGACTCGACTCGGAGGGGGCCGTGGTAGGTAGAAAAGGGGTTGAGCACAAGTTCGGCTTGAA
TACACACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis