Browse Element(s) Details


OsAffx.13636.1.S1_at

Description tigr:9632.m00220
TID=OsAffx.13636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0313011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03100Os.26445.2.S1_at4/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100Os.26445.1.A1_at3/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100OsAffx.18867.1.S1_at1/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03110NANA4+1277545..1281879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03120NANA4+1282719..1287616retrotransposon protein, putative, unclassified
LOC_Os04g03130OsAffx.13636.1.S1_at11/114+1289041..1291113hypothetical protein
LOC_Os04g03140OsAffx.25849.1.S1_at11/114+1293423..1293926hypothetical protein
LOC_Os04g03150NANA4+1301772..1305052retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13636.1.S1_at--90--6331Chr04:1291057..1291081 (25 bp)
GATGCGATACCTAGGAAGGAATCCA
LOC_Os04g03130
OsAffx.13636.1.S1_at--568--8211Chr04:1291040..1291064 (25 bp)
GGAATCCAATATTCGCTGGGCAAGA
LOC_Os04g03130
OsAffx.13636.1.S1_at--64--8551Chr04:1290991..1291015 (25 bp)
TGGAGCACTACTGCAGATGGAGTCA
LOC_Os04g03130
OsAffx.13636.1.S1_at--399--10451Chr04:1289271..1289291 (21 bp)
TTACGGATTTGTGAGCAGTGCCTTC
LOC_Os04g03130
OsAffx.13636.1.S1_at--805--10251Chr04:1289264..1289288 (25 bp)
TTTGTGAGCAGTGCCTTCAGCATCA
LOC_Os04g03130
OsAffx.13636.1.S1_at--236--5931Chr04:1289259..1289283 (25 bp)
GAGCAGTGCCTTCAGCATCACAATT
LOC_Os04g03130
OsAffx.13636.1.S1_at--795--2451Chr04:1289232..1289256 (25 bp)
AACAATGCATATACCTTGCATGCGA
LOC_Os04g03130
OsAffx.13636.1.S1_at--11--1751Chr04:1289220..1289244 (25 bp)
ACCTTGCATGCGATTGATGTGAGAA
LOC_Os04g03130
OsAffx.13636.1.S1_at--883--6251Chr04:1289205..1289229 (25 bp)
GATGTGAGAACATGTCCCTTTGCAC
LOC_Os04g03130
OsAffx.13636.1.S1_at--620--5971Chr04:1289200..1289224 (25 bp)
GAGAACATGTCCCTTTGCACTTCAA
LOC_Os04g03130
OsAffx.13636.1.S1_at--603--731Chr04:1289194..1289218 (25 bp)
ATGTCCCTTTGCACTTCAACAATTA
LOC_Os04g03130
Target Sequence 
GATGCGATACCTAGGAAGGAATCCAATATTCGCTGGGCAAGAGGACTGTGGTGATATGAGAGAAGGTGGAGCACTACTGC
AGATGGAGTCAAGAGGAAGAAGTTATAGGGATAGTGGGAGTCTCTTGTTACGGATTTGTGAGCAGTGCCTTCAGCATCAC
AATTACAACAATGCATATACCTTGCATGCGATTGATGTGAGAACATGTCCCTTTGCACTTCAACAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis