Browse Element(s) Details


Os.27423.1.S1_x_at

Description gb:AK120844.1
DB_XREF= gi:37990467
TID=Os.27423.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022M14, full insert sequence.
FL= gb:AK120844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0634011/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06290OsAffx.7500.1.S1_at10/1112+3006927..3008775hypothetical protein
LOC_Os12g06300Os.54296.1.S1_at9/1112+3012312..3014620hypothetical protein
LOC_Os12g06314NANA12+3020031..3020530NA
LOC_Os12g06330Os.48567.1.S1_at11/1112+3023062..3028392expressed protein
LOC_Os12g06340Os.27423.1.S1_x_at11/1112+3028600..3033637Associated with HOX family protein, expressed
LOC_Os12g06350NANA12+3043007..3046097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06360OsAffx.20387.1.S1_x_at1/1112+3046350..3048728retrotransposon protein, putative, unclassified
LOC_Os12g06370OsAffx.17106.1.S1_x_at1/1112+3049788..3052848retrotransposon protein, putative, unclassified
LOC_Os12g06390OsAffx.19520.1.S1_at11/1112+3057519..3058481hypothetical protein
LOC_Os12g06380Os.24302.1.S1_at10/1112+3058462..3062767transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27423.1.S1_x_at--1029--4231Chr12:3029223..3029247 (25 bp)
CCGGGAGCTGCTAATGAAGTTCACT
LOC_Os12g06340
Os.27423.1.S1_x_at--449--3011Chr12:3029211..3029235 (25 bp)
AATGAAGTTCACTGAGGCCGGCGGC
LOC_Os12g06340
Os.27423.1.S1_x_at--1161--7831Chr12:3029119..3029143 (25 bp)
GGTACTCGCTGTTCACGGCGGCGCA
LOC_Os12g06340
Os.27423.1.S1_x_at--506--1171Chr12:3029095..3029119 (25 bp)
AGTACGGGCATCAGTTCGGCTCGGA
LOC_Os12g06340
Os.27423.1.S1_x_at--692--1211Chr12:3029083..3029107 (25 bp)
AGTTCGGCTCGGACCATTTCGCGTT
LOC_Os12g06340
Os.27423.1.S1_x_at--1137--1371Chr12:3028990..3029014 (25 bp)
AGACGCCGGCGTCGTTTCTCATAGG
LOC_Os12g06340
Os.27423.1.S1_x_at--19--5751Chr12:3028926..3028950 (25 bp)
GACGGCCGGCTACGACATGAACATG
LOC_Os12g06340
Os.27423.1.S1_x_at--1100--5471Chr12:3028908..3028932 (25 bp)
GAACATGCAGAGCACCAAGTCGTTG
LOC_Os12g06340
Os.27423.1.S1_x_at--650--2851Chr12:3028892..3028916 (25 bp)
AAGTCGTTGGCTGCTCAGCTCATGA
LOC_Os12g06340
Os.27423.1.S1_x_at--751--6011Chr12:3028869..3028893 (25 bp)
GAGAGACTTCGTGGCATAGTGATTA
LOC_Os12g06340
Os.27423.1.S1_x_at--282--4451Chr12:3028770..3028794 (25 bp)
GCCTTGACATGCTTGAGATTACTCA
LOC_Os12g06340
Target Sequence 
CCGGGAGCTGCTAATGAAGTTCACTGAGGCCGGCGGCGAGGGCGTGAGAACGGGCCACCCGCACGTCAACGACGACGACG
ACGACGTCCCTGGCGGCGCCGGCGGGTACTCGCTGTTCACGGCGGCGCAGTACGGGCATCAGTTCGGCTCGGACCATTTC
GCGTTCGCCGGGCACGGCGGCGGAGGCGGCGGCGGCGTGTCGCTCACGCTCGGCCTCCCGCACGGCGCCGACCAGACGCC
GGCGTCGTTTCTCATAGGCGCCGGCGCCGGCAGCGACGGCGGCGGCGCGCCGGTGACGACGGCCGGCTACGACATGAACA
TGCAGAGCACCAAGTCGTTGGCTGCTCAGCTCATGAGAGACTTCGTGGCATAGTGATTAGTACAGACATAATTAATTAAT
TAATTAATTAATTAGTTAATTAGGGAATGTGTTCATATAGAAATAAGGGTTAAGCCTTGACATGCTTGAGATTACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27423.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis