Browse Element(s) Details


Os.27442.1.A1_at

Description gb:AK073954.1
DB_XREF= gi:32983977
TID=Os.27442.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075M16, full insert sequence.
FL= gb:AK073954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g390806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39060OsAffx.2912.1.S1_s_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39070Os.11948.1.S1_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39070OsAffx.12403.1.S1_s_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39080Os.27442.1.A1_at6/112+23600664..23601421expressed protein
LOC_Os02g39090NANA2+23603431..23604774Protein kinase domain containing protein, expressed
LOC_Os02g39100OsAffx.24643.1.S1_s_at11/112+23606150..23608548Leucine Rich Repeat family protein, expressed
LOC_Os02g39110NANA2+23611877..23618032retrotransposon protein, putative, unclassified
LOC_Os02g39120Os.28943.1.S1_x_at1/112+23618665..23621930transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27442.1.A1_at--62--8991Chr02:23601194..23601218 (25 bp)
TGAACTGAGTGCACAATGTCTCTAT
LOC_Os02g39080
Os.27442.1.A1_at--198--771Chr02:23601209..23601233 (25 bp)
ATGTCTCTATTGCTGAGGACTCGTT
LOC_Os02g39080
Os.27442.1.A1_at--795--951Chr02:23601224..23601248 (25 bp)
AGGACTCGTTCTGTTCACCAAATGA
LOC_Os02g39080
Os.27442.1.A1_at--570--5991Chr02:23601280..23601304 (25 bp)
GAGACTCAGACCGATGCTTGTTCAT
LOC_Os02g39080
Os.27442.1.A1_at--1061--6731Chr02:23601299..23601323 (25 bp)
GTTCATCGCCAGGTGCCCAGGTTTT
LOC_Os02g39080
Os.27442.1.A1_at--115--6411Chr02:23601349..23601373 (25 bp)
GATCTGCCGTTTGGTGGCTGGTAAT
LOC_Os02g39080
Os.27442.1.A1_at--80--271Chr02:23601402..23601426 (25 bp)
ATATGCTCGGTGCTTGTTGATTGCC
NONE
Os.27442.1.A1_at--547--2811Chr02:23601508..23601532 (25 bp)
AAGATTTCGGCAGGCTACTGTGGCT
NONE
Os.27442.1.A1_at--941--10691Chr02:23601532..23601556 (25 bp)
TTGCCCAACCTTGCTGTATCACTGT
NONE
Os.27442.1.A1_at--569--6891Chr02:23601547..23601571 (25 bp)
GTATCACTGTTTTACAACTTCCTAA
NONE
Os.27442.1.A1_at--57--411Chr02:23601654..23601678 (25 bp)
ATGGACGACGTTATTGACTTAAGAC
NONE
Target Sequence 
TGAACTGAGTGCACAATGTCTCTATTGCTGAGGACTCGTTCTGTTCACCAAATGAAACCTTTTTTTTGTGGTTTTGTAGA
TTTTCAGAGACTCAGACCGATGCTTGTTCATCGCCAGGTGCCCAGGTTTTCCGTTCTTCTTGGTGAAGTTAAGTGGATCT
GCCGTTTGGTGGCTGGTAATATTGATCTGAATCTGATACATATCAATTATATGCTCGGTGCTTGTTGATTGCCATCAATA
ATACCTTGTGTTCATCTGGAAAATATCATGTATAGTGTATTTAAGAACTCTGTATCAGAGCAGTTCGAAGATTGAAGATT
TCGGCAGGCTACTGTGGCTTGCCCAACCTTGCTGTATCACTGTTTTACAACTTCCTAATAGGAGATGTGTTTATGTAACT
CTGATTAGATACCGTTTTATTTGGAGGGATNATATAACTTNCTACTCTCTCCATTTTAAAATGGACGACGTTATTGACTT
AAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27442.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis