Browse Element(s) Details


Os.27483.1.S1_at

Description gb:AK059812.1
DB_XREF= gi:32969830
TID=Os.27483.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B04, full insert sequence.
FL= gb:AK059812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1344011/11Germin-like protein subfamily 1 member 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13400NANA8+7966587..7966832hypothetical protein
LOC_Os08g13410NANA8+7970000..7972730retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13420OsAffx.16976.1.S1_at11/118+7976216..7979195D-mannose binding lectin family protein
LOC_Os08g13430Os.18400.1.S1_at11/118+7984754..7987386expressed protein
LOC_Os08g13440Os.27483.1.S1_at11/118+7988061..7989374Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g13450NANA8+8000829..8001272hypothetical protein
LOC_Os08g13460OsAffx.16977.1.S1_at11/118+8004693..8008003expressed protein
LOC_Os08g13460OsAffx.28520.1.S1_at1/118+8004693..8008003expressed protein
LOC_Os08g13470OsAffx.16978.1.S1_at11/118+8012620..8014275hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031012cellular_componentextracellular matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27483.1.S1_at--1125--9911Chr08:7988599..7988623 (25 bp)
TACTGAGCTCCTTACCGTGCTTGAG
LOC_Os08g13440
Os.27483.1.S1_at--59--10411Chr08:7988557..7988581 (25 bp)
TTTTGTCACGTCCAACCCAAACAAG
LOC_Os08g13440
Os.27483.1.S1_at--41--9631Chr08:7988455..7988479 (25 bp)
TCATGACAAGCCAGCAGTTGCCCAA
LOC_Os08g13440
Os.27483.1.S1_at--813--6791Chr08:7988403..7988427 (25 bp)
GTTATTACTATTGCAAGCGCGGTGT
LOC_Os08g13440
Os.27483.1.S1_at--766--2671Chr08:7988389..7988413 (25 bp)
AAGCGCGGTGTTTGGCTCACAGCCA
LOC_Os08g13440
Os.27483.1.S1_at--507--2151Chr08:7988371..7988395 (25 bp)
ACAGCCACCGATCTCCGATGATGTT
LOC_Os08g13440
Os.27483.1.S1_at--736--10131Chr08:7988226..7988250 (25 bp)
TATGCACCTTGCACTTTTCATAAAG
LOC_Os08g13440
Os.27483.1.S1_at--724--331Chr08:7988183..7988207 (25 bp)
ATAAACGGGCTTTTGCTGGCCAATT
LOC_Os08g13440
Os.27483.1.S1_at--358--9131Chr08:7988170..7988194 (25 bp)
TGCTGGCCAATTAGTGTGTCACGAT
LOC_Os08g13440
Os.27483.1.S1_at--756--7471Chr08:7988157..7988181 (25 bp)
GTGTGTCACGATATGTTGCTACAGT
LOC_Os08g13440
Os.27483.1.S1_at--998--5671Chr08:7988095..7988119 (25 bp)
GACATTGTTACATCCTCTTTTTCCT
LOC_Os08g13440
Target Sequence 
TACTGAGCTCCTTACCGTGCTTGAGGGAACACTCTATGTTGGNTTTTGTCACGTCCAACCCAAACAAGCTCTTCTCTAAG
GTGGTTTGTAAGGGTGACGTGTTTGTGTTCCCTAAGGCAATGATTCACTTCCAAATGAACCTAGATCATGACAAGCCAGC
AGTTGCCCAATCAGCACTCAGTAGCCAAAACCCTGGAGTTATTACTATTGCAAGCGCGGTGTTTGGCTCACAGCCACCGA
TCTCCGATGATGTTCTGACCAAGGCGTTTCAGGTGGAAAAGAAGCTAATTGATTGGCTCCAATCTCAGTTCTGGGAGAAC
AACTACTGATTATATTCTTATATATTTATTGTGCTTTTGTGTATGGGAGGGTGATATGCACCTTGCACTTTTCATAAAGT
ATGTTACAGTATGTAAAATAAACGGGCTTTTGCTGGCCAATTAGTGTGTCACGATATGTTGCTACAGTCGTTTGATTATN
CCGTGTTTAATAACTGGAATGAAATGGACATTGTTACATCCTCTTTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis