Browse Element(s) Details


Os.27537.1.S1_at

Description gb:AK105098.1
DB_XREF= gi:32990307
TID=Os.27537.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.27537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome4, At4g37460 (OJ1118_G09.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C04, full insert sequence.
FL= gb:AK105098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0230011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02270OsAffx.16043.1.S1_at11/117+734314..737018hypothetical protein
LOC_Os07g02280OsAffx.21080.1.S1_at11/117+741230..743134pentatricopeptide, putative, expressed
LOC_Os07g02290OsAffx.16045.1.S1_at11/117+747870..751388F-box domain containing protein
LOC_Os07g02300Os.27537.1.S1_at11/117+751972..761671TPR Domain containing protein, expressed
LOC_Os07g02300OsAffx.31868.1.S1_at2/117+751972..761671TPR Domain containing protein, expressed
LOC_Os07g02310NANA7+771120..772854retrotransposon protein, putative, unclassified
LOC_Os07g02319NANA7+777018..777299NA
LOC_Os07g02330Os.38299.1.S1_at11/117+778683..780249Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27537.1.S1_at--55--2511Chr07:752494..752518 (25 bp)
AACTTCATGCCGCTTTCAAGAGGTT
LOC_Os07g02300
Os.27537.1.S1_at--971--2751Chr07:752477..752501 (25 bp)
AAGAGGTTCAGCTGTCGTTGGTTAC
LOC_Os07g02300
Os.27537.1.S1_at--803--10471Chr07:752456..752480 (25 bp)
TTACGTGGTGTTGCTTGGCTTATTT
LOC_Os07g02300
Os.27537.1.S1_at--56--3291Chr07:752424..752448 (25 bp)
CAAACATGGATGTCACTGCTAGCAT
LOC_Os07g02300
Os.27537.1.S1_at--450--10851Chr07:752378..752402 (25 bp)
TTGGGAGGCCATTCTGTCTCAAGAT
LOC_Os07g02300
Os.27537.1.S1_at--334--1671Chr07:752328..752352 (25 bp)
AGCCCTGGCTGTATCCATCAATAAA
LOC_Os07g02300
Os.27537.1.S1_at--1124--5031Chr07:752278..752302 (25 bp)
GCAGATGTCAGCGTGGCATTCAGCA
LOC_Os07g02300
Os.27537.1.S1_at--829--3291Chr07:752252..752276 (25 bp)
CACAGGATCGGTTGTAGCGGCCTTA
LOC_Os07g02300
Os.27537.1.S1_at--380--1611Chr07:752237..752261 (25 bp)
AGCGGCCTTAACTTGTGTTGACACA
LOC_Os07g02300
Os.27537.1.S1_at--373--4851Chr07:752087..752111 (25 bp)
GCTACAGTTTTTCAGTTGCTTCATA
LOC_Os07g02300
Os.27537.1.S1_at--1046--751Chr07:752017..752041 (25 bp)
ATGTCATTCTTTTTCCCTTGAACGA
LOC_Os07g02300
Target Sequence 
AACTTCATGCCGCTTTCAAGAGGTTCAGCTGTCGTTGGTTACGTGGTGTTGCTTGGCTTATTTNTGGCAGCAAACATGGA
TGTCACTGCTAGCATCCCTCATGGGGTTCAGGTAGATTGGGAGGCCATTCTGTCTCAAGATCCTGACACATTTGTTGATA
AAATCAAGCCCTGGCTGTATCCATCAATAAAAACAAGCAGGANCCTGAAAGACTATGCAGATGTCAGCGTGGCATTCAGC
ACCACAGGATCGGTTGTAGCGGCCTTAACTTGTGTTGACACATGAGTTTGATANTGATTTCAGCGGATACTATAGGTTGG
CTGAATTGTTAGCGTCTTTGTTTCNCCATAATACCCCCATGAACTGTTAAAACAGCTTTGTNTAGATTGTCGANCATTTT
TCGGTTTGCTACAGTTTTTCAGTTGCTTCATAGAGCTGTATACCTGTATGTTGTAATGCTGTTTGTTTGACACAATAATG
TCATTCTTTTTCCCTTGAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis