Browse Element(s) Details


Os.27545.1.S1_at

Description gb:AK106058.1
DB_XREF= gi:32991267
TID=Os.27545.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full insert sequence.
FL= gb:AK106058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3854011/11Aldose 1-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38490OsAffx.26376.1.S1_at11/114+22659900..22660804hypothetical protein
LOC_Os04g38500OsAffx.4015.1.S1_at11/114+22661715..22662312hypothetical protein
LOC_Os04g38510OsAffx.14191.1.S1_at11/114+22664388..22664913hypothetical protein
LOC_Os04g38520Os.15136.1.A1_s_at11/114+22671226..22673671expressed protein
LOC_Os04g38520Os.13740.1.A1_at11/114+22671226..22673671expressed protein
LOC_Os04g38530Os.20067.1.S1_at11/114+22674694..22679574Aldose 1-epimerase family protein, expressed
LOC_Os04g38540Os.27545.1.S1_at11/114+22683509..22686551Aldose 1-epimerase family protein, expressed
LOC_Os04g38550Os.24305.1.A1_at9/114+22689474..22690986expressed protein
LOC_Os04g38560Os.18265.1.S1_at11/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560OsAffx.23254.1.S1_x_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560Os.54835.1.S1_s_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed
LOC_Os04g38580NANA4+22706530..22707312hypothetical protein
LOC_Os04g38590Os.55234.1.S1_s_at2/114+22710340..22710689hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27545.1.S1_at--207--3531Chr04:22686168..22686192 (25 bp)
CATGCAGCTGTACACCGGCAACTGG
LOC_Os04g38540
Os.27545.1.S1_at--855--1771Chr04:22686181..22686205 (25 bp)
ACCGGCAACTGGCTGAACAACATCA
LOC_Os04g38540
Os.27545.1.S1_at--317--8031Chr04:22686288..22686312 (25 bp)
GGAGTTCCCCTCCATGACGGTCAGG
LOC_Os04g38540
Os.27545.1.S1_at--4--7451Chr04:22686322..22686346 (25 bp)
GTGTACAGGCACGACATGGCCTTCA
LOC_Os04g38540
Os.27545.1.S1_at--258--10511Chr04:22686343..22686367 (25 bp)
TTCAAGTTCTCCTTCTAGCTCTCTA
LOC_Os04g38540
Os.27545.1.S1_at--294--3771Chr04:22686361..22686385 (25 bp)
CTCTCTAGCTGATCAGTCAGGATGA
LOC_Os04g38540
Os.27545.1.S1_at--1151--3471Chr04:22686378..22686402 (25 bp)
CAGGATGATCGTGTGGTTGTAGTAT
LOC_Os04g38540
Os.27545.1.S1_at--318--6891Chr04:22686399..22686423 (25 bp)
GTATACCATTTTTCAAGATTGTGCG
LOC_Os04g38540
Os.27545.1.S1_at--317--3531Chr04:22686476..22686500 (25 bp)
CATGCGCTCCATGAACAATTATGTT
LOC_Os04g38540
Os.27545.1.S1_at--616--6851Chr04:22686498..22686522 (25 bp)
GTTTGCGGCAAGCTATCATGTTCAT
LOC_Os04g38540
Os.27545.1.S1_at--62--8911Chr04:22686522..22686546 (25 bp)
TGAGCAGATATGTACACGTCACATT
LOC_Os04g38540
Target Sequence 
CATGCAGCTGTACACCGGCAACTGGCTGAACAACATCAAGGGCAAGGGCGGCAAGGTGTACCAGCAGTACGGCGGGTTCT
GCCTGGAGACGCAGGGGTACGTGGACGCCGTGAACCACCCGGAGTTCCCCTCCATGACGGTCAGGCCCGGCCAGGTGTAC
AGGCACGACATGGCCTTCAAGTTCTCCTTCTAGCTCTCTAGCTGATCAGTCAGGATGATCGTGTGGTTGTAGTATACCAT
TTTTCAAGATTGTGCGAATAATTATTGGCGTGTTGTTGAAATAATTGAAGAATGGGGTCGTTCTCNAGCATGCGCTCCAT
GAACAATTATGTTTGCGGCAAGCTATCATGTTCATGAGCAGATATGTACACGTCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis