Browse Element(s) Details


Os.27759.1.S1_at

Description gb:AK120660.1
DB_XREF= gi:37990283
TID=Os.27759.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158F22, full insert sequence.
FL= gb:AK120660.1 gb:AK108632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4672011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46700Os.25567.1.S1_at7/111+26919071..26926245SET domain containing protein, expressed
LOC_Os01g46710Os.5417.3.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46710Os.5417.2.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46720Os.27759.1.S2_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.27759.1.S1_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.9016.1.S1_x_at2/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46730OsAffx.2259.1.S1_at11/111+26946310..26947082hypothetical protein
LOC_Os01g46740OsAffx.23693.1.S1_at10/111+26949677..26951259hypothetical protein
LOC_Os01g46750Os.19404.1.S1_at11/111+26955766..26963795AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27759.1.S1_at--585--5051Chr01:26943759..26943783 (25 bp)
GCAGAATCTGATTGGCCTCATGACA
LOC_Os01g46720
Os.27759.1.S1_at--553--8431Chr01:26943772..26943796 (25 bp)
GGCCTCATGACAAATCTGGTAGCGA
LOC_Os01g46720
Os.27759.1.S1_at--85--2091Chr01:26943801..26943825 (25 bp)
ACATTATCTGTTACCTCATCTGCGA
LOC_Os01g46720
Os.27759.1.S1_at--1128--6491Chr01:26943870..26943894 (25 bp)
GATAGTAGGGTTGCATCTTCAAGAT
LOC_Os01g46720
Os.27759.1.S1_at--1154--2991Chr01:26943938..26943962 (25 bp)
AATGAAAGAGCTGCCTGCTAGCCTC
LOC_Os01g46720
Os.27759.1.S1_at--693--10451Chr01:26943976..26944000 (25 bp)
TTACCATGGATGAACTCGACGTATC
LOC_Os01g46720
Os.27759.1.S1_at--941--5891Chr01:26944004..26944028 (25 bp)
GAGCTGCAGCTCGACTTTAAATGTC
LOC_Os01g46720
Os.27759.1.S1_at--813--3391Chr01:26944065..26944089 (25 bp)
CAGACCCCGCCAGAAATGTTTGATT
LOC_Os01g46720
Os.27759.1.S1_at--538--7911Chr01:26944126..26944150 (25 bp)
GGTTGATGATTCTTCGTGGTGTTAA
LOC_Os01g46720
Os.27759.1.S1_at--1142--7231Chr01:26944154..26944178 (25 bp)
GTCCGCGTTATTTTTCACCAGATCA
LOC_Os01g46720
Os.27759.1.S1_at--1092--2231Chr01:26944178..26944202 (25 bp)
AAATTCTAGAGCTGATTCCTGACGA
LOC_Os01g46720
Target Sequence 
GCAGAATCTGATTGGCCTCATGACAAATCTGGTAGCGAAGGAACATTATCTGTTACCTCATCTGCGAGGATAGCAACTGG
AAGAATTTATATTCACGAACAGGATGGTGATGATAGTAGGGTTGCATCTTCAAGATCTTCTAGGAGATACCTTCGTGGTA
AGTGGAGAAAAGTTTCAAAAATGAAAGAGCTGCCTGCTAGCCTCCCCACAGTAAACATTACCATGGATGAACTCGACGTA
TCAATGAGCTGCAGCTCGACTTTAAATGTCAGTTCTGCGCAGAAGGTGCTGCAAGAGATCCGCACTCAGACCCCGCCAGA
AATGTTTGATTTATCAAAAATTGTTTGTGGGACATACGTTGATGCAAGGTTGATGATTCTTCGTGGTGTTAACGGGTCCG
CGTTATTTTTCACCAGATCAAATTCTAGAGCTGATTCCTGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis