Browse Element(s) Details


Os.19404.1.S1_at

Description gb:AK067776.1
DB_XREF= gi:32977794
TID=Os.19404.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119K02, full insert sequence.
FL= gb:AK067776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4675011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46710Os.5417.3.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46710Os.5417.2.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46720Os.27759.1.S2_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.27759.1.S1_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.9016.1.S1_x_at2/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46730OsAffx.2259.1.S1_at11/111+26946310..26947082hypothetical protein
LOC_Os01g46740OsAffx.23693.1.S1_at10/111+26949677..26951259hypothetical protein
LOC_Os01g46750Os.19404.1.S1_at11/111+26955766..26963795AMP-binding enzyme family protein, expressed
LOC_Os01g46760Os.5690.1.S1_at11/111+26979814..26985160Protein phosphatase 2C containing protein, expressed
LOC_Os01g46760Os.54445.1.S1_at1/111+26979814..26985160Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0010143biological_processcutin biosynthesis
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19404.1.S1_at--206--3591Chr01:26962655..26962679 (25 bp)
CATTTATGGTCTTGTTTCTGCTATA
LOC_Os01g46750
Os.19404.1.S1_at--546--5231Chr01:26962866..26962890 (25 bp)
GAATAGCTTTGAGTCATTCCTTGTT
LOC_Os01g46750
Os.19404.1.S1_at--809--4311Chr01:26962884..26962908 (25 bp)
CCTTGTTGCTGTGGTCAATCCAAAC
LOC_Os01g46750
Os.19404.1.S1_at--936--7991Chr01:26962959..26962983 (25 bp)
GGAGGCATTGTGTGAGAACCCCAAA
LOC_Os01g46750
Os.19404.1.S1_at--931--7011Chr01:26963177..26963201 (25 bp)
GTACATCTTGAACCAGTGCCATTTG
LOC_Os01g46750
Os.19404.1.S1_at--261--1451Chr01:26963238..26963262 (25 bp)
AGAAGCGCCCTCAATTGCTCAAGTA
LOC_Os01g46750
Os.19404.1.S1_at--923--1451Chr01:26963543..26963567 (25 bp)
AGAAGTGCCAAATGAGCTCGCCATG
LOC_Os01g46750
Os.19404.1.S1_at--154--4431Chr01:26963562..26963586 (25 bp)
GCCATGCCGTCTAGAACATCCAAGA
LOC_Os01g46750
Os.19404.1.S1_at--59--5091Chr01:26963605..26963629 (25 bp)
GCACCAATCTCATGCTGTTTGTATG
LOC_Os01g46750
Os.19404.1.S1_at--1120--7851Chr01:26963708..26963732 (25 bp)
GGTATGCACCTGTACGAAGAATCGC
LOC_Os01g46750
Os.19404.1.S1_at--606--5251Chr01:26963726..26963750 (25 bp)
GAATCGCAAGCACCGTTTCTGTATT
LOC_Os01g46750
Target Sequence 
CATTTATGGTCTTGTTTCTGCTATAGATTCGATATGGGTATATGGGAATAGCTTTGAGTCATTCCTTGTTGCTGTGGTCA
ATCCAAACAAGGAAGCATTGGAGAGCTGGGCTGCAGCAAATGGAATCAGTGGTGATTTGGAGGCATTGTGTGAGAACCCC
AAAGCAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGCTCAAAGGTTTTGAATTCATAAAGGC
TGTACATCTTGAACCAGTGCCATTTGACATGGACCGTGATTTGATTACTCCAACATATAAAAAGAAGCGCCCTCAATTGC
TCAAGTACTACCAGGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCTAGAACATCCAAGAT
CAAAGGAGCTGACAGAAGCACCAATCTCATGCTGTTTGTATGTTCATAGTAGGGACGGAAAAATGTTGTAATATCTCTTT
TGGAAACGTCTTGACATATATGATTTATTCGTAGAAACGGGGTATGCACCTGTACGAAGAATCGCAAGCACCGTTTCTGT
ATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis